BAC Information

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BAC

Clone NameMSMg01-085A06
Chromosome10 (Build37)
Map Location 39,073,805 - 39,074,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085A06.T7 (MSMg01no085_a06.b1)MSMg01-085A06.TJ (MSMg01no085_a06.g1)
ACCAG304716AG304717
length1,3051,272
length of high quality
(start - end)
208 (117 - 324)199 (118 - 316)
definitionCHROMAT_FILE: MSMg01no085_a06.b1 PHD_FILE: MSMg01no085_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:13 2005CHROMAT_FILE: MSMg01no085_a06.g1 PHD_FILE: MSMg01no085_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGGCTATAGACTCCTATAGGGAGAGATCCGCGGAATTCCTGTGAA
GAATCAGCCACTTTATGGATTGATCCTAGGAACCTGGAGCCAGTATCTTT
CCTTTATCTTCCCAGGGCTTGTGATACGGCTTCAATTCAGGTGTCTGCTC
TGCAGTAGTATAAGACAATAAAATGTCTGGTGTTTAAGCCACTTTATCTG
TATAAGTTTCTAACAGTAGCCCTGGAAAACTAAAAACATGAACTTTGCAA
AGAATTATGCAGTAAATAAGTTATTCTACTTTGTGGAATTGTTTTGAGGA
TTCTCTTGATTAATATTCATGCTCCATGAACGTTGACTTGTGCAAAAATT
GGCCTTACACGGTTAACCATCCCTTCTATTCCCTGTGCCAATTTTTTTTT
ATGTCATAAATCCTGCCATACGTCCTCATTTGTTAATCACTCCTTGTGTT
TGTTATACTTCTCATTTTACTCTCTTCATATAACTTGTTATCCTATGTTT
CATGACAGTGATTTCTGTGCCACTTTCTTTGTACCCTCTCTATTATTTTA
TTGTTTTTTATTTTTTCTTTTTGATTTTTTCTATTTAAACATTTTTTTTT
TTTTCTTTCTTTTTTCCTTATTTCTATTATTTTCTATCCTATTTCTTTTT
ATATTATTCTTCCTTTCTTTTTTCTTTTTTTTTTCATTTTTTATTTCTTC
TTTTTTCTTCTTTTTTCTTTTCTTTCTTCTTTTTTTTCTATTATTCTTTC
TTTTTTTTTTATTTATTTTCATTCTTCTCTTTTTATTTTTTTTTTATTCC
TTTCCTTTTTCTTTTTTTTTATTCTTTCTTTTTTATTTTCTTCATCTTAT
TTTTTTTTTTCTTTATTTTTTCAATCTTCCTTTTATTTTTTATCTTTTTT
CTTTTTTATTTTTTTTCTTTTCCTTTTTTTTATCTTCATTATATTTTTCT
TTTCTCTTACTTATTTTTTCTTTTTTCTTCTATCTATTTTTTAATATATT
TATTTCTTTTTTTTTTCTTCTCTTTCTTTTACTTTTTATTTTTATCTTTC
TTATTATTCTTTATATCATATTTATATTTTCTATTTTTACATCTTATCTA
ACTTTCATTCTTTTCTATTTTTTTATCCTTCTTCTTTCTTATTATCTTTT
GATTTTTTCTTTCTGTCTTCTATCTTTTATTCTCTTTTATATATATATTC
TATATATCTATTCTTCATTCCTTCTTCATCTTCTTTTTTTCTTTTTATTC
TTCTTTATATTTCTCTTATTTTTCTTTTTCCTCTTTACTACTCTCTTTCT
TATTT
TTTTTATGAGGTGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTAACACATTCCTGAACATCTATGTAAGTTG
AAGCAAAAATGTGATTCTAGCATTTCTGAAAAGAAATGTTATTATTTTAC
CTGAAAATCCTATTCATTCTCATTTTCTTAGCCCATGGTATCTCCTTCCT
TAGGTTTAGCTCAGCTTCAGGCAGGAGGGTGGTAGATGTCAATTTAGCAA
GATATTCATTAAGACTGGGCAGCCCCAGGATGCTGCTCCATCTCAGGAGC
AGGGCCTCCCGCCAGGAGAGAACAAACTTCTAGGGGTACCTCAGGGAGAT
AGGGACATCCTCACATGGGCTTTGGTTTTCCAAGCCACTCTTGCCTTTTT
TTGTAGACGGAGAAGAGGATCAGAGAACAGAAGTTCTTTCACAGTTCTTC
TACTCCTGCTCAGGACTTCACCCCTGCTAAAGCAAGACTCGTGTTATACA
GTTACTGAGCTGTTTCAGTTAATTCAACAAGGCAGCCTAGCCATTCTAAT
ATTTCAAATCTATGCCAACACTTAGGCAGTTAAGACGAAAGCTGACCCTA
CCTATGCTGTTCCATGGAAAGGTGATGTTAATTTTTTGCTCTCTTTTTTG
TTAGATCTCTTGCTCCTCATTATTTCCTGTTCATAATCTTTGTTATAGTG
TCCTTTGTACTATATTTATTTCCATAGTATTCTATCTCTTTTTCTGCTTC
TCTTTTTCTCTATCTATTTTTTTTTTCTTCATATTTATTTACTTTTTATT
TTTATTTTTTTTATTTTCTCTTTTTTTTTCCTTTCATTGCCTATCCTTTT
TTTCTTATCCTTTACCATCTTTTTTTTTTTCTATTCTCTTTTTATTTTTT
CCTTATTTCTTTTTTATTTTATCTTCTTTTCTTTTCTATTAATCCTTTCT
TTTATACTTCTTTTTTACCTCTCTTTCTTCTTCTTTCTCTATTCCTTATT
ATTTATCTCATTCTTCCTTTATTTCTTCACTTATACCTTTTAACTCCTCT
TATATCTTTTTACTCTTTTTTCTCTTTTTTTTCTTCTATAACACTTCCTT
CTGTATTCTTTTTATATGAGACTTATGTCATACTTTTATTTTCCTATTCT
ATATTTCTTATTCTTTTCTTTGCTTTCTAGCTTTATTTCCTTCTCTCACA
CTTGACCCTTTTCTTTCTTTATATTCTTGTCTATACTCCAAGATGTACCT
TATTTATATCTTTTCGTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_a06.g1 MSMg01no085_a06.g1 CHROMAT_FILE:
MSMg01no085_a06.g1 PHD_FILE: MSMg01no085_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:13 2005
         (199 letters)



>mm_chr10_39073605_39074202
          Length = 598

 Score =  356 bits (184), Expect = e-103
 Identities = 196/200 (98%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcatttctgaaaagaaatgttattattttacctgaaaatcctattcattctcattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tagcatttctgaaaagaaatgttattattttacctgaaaatcctattcattctcattttc 339

                                                                       
Query: 61  ttagcccatggtatctccttccttaggtttagctcagcttcaggcaggagggtggtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 338 ttagcccatggtatctccttccttaggtttagctcagcttcaggcaggagggtgggagat 279

                                                                       
Query: 121 gtcaatttagcaagatattcattaagact-gggcagccccaggatgctgctccatctcag 179
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 278 gtcaatttagcaagatattcattaaga-tggggcagccccaggatgctgctccatctcag 220

                               
Query: 180 gagcagggcctcccgccagg 199
           ||||||||||| ||||||||
Sbjct: 219 gagcagggcct-ccgccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 598
Length adjustment: 8
Effective length of query: 191
Effective length of database: 590
Effective search space:   112690
Effective search space used:   112690
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)