Query= MSMg01no085_f21.b1 MSMg01no085_f21.b1 CHROMAT_FILE:
MSMg01no085_f21.b1 PHD_FILE: MSMg01no085_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:03 2005
(194 letters)
>mm_chr10_56240061_56240654
Length = 594
Score = 310 bits (160), Expect = 5e-89
Identities = 192/218 (88%), Gaps = 24/218 (11%)
Strand = Plus / Plus
Query: 1 aggagaaggattctctctctctctctctctctctctct---------------------- 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aggagaaggattctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgt 236
Query: 39 --gtgtgtgtgtgtgtgctagtactgctgttgttgcagcagtactaggctgtaatctagg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtgtgtgtgtgtgtgtgctagtactgctgttgttgcagcagtactaggctgtaatctagg 296
Query: 97 gacttgggtatgacaggtgaccaaatgttgaggtgtaccctgacaaacaccccctttcaa 156
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 297 gacttgggtatgacaggtgaccaaatgttgaggtgtaccctgacaaacaccctcttttaa 356
Query: 157 actttcagtatattgagaatccaactaaaacaccataa 194
||||||||||||||||||||||||||||||||||||||
Sbjct: 357 actttcagtatattgagaatccaactaaaacaccataa 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no085_f21.g1 MSMg01no085_f21.g1 CHROMAT_FILE:
MSMg01no085_f21.g1 PHD_FILE: MSMg01no085_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:03 2005
(515 letters)
>mm_chr10_56406676_56407590
Length = 915
Score = 965 bits (499), Expect = 0.0
Identities = 511/515 (99%)
Strand = Plus / Minus
Query: 1 ctctaaaaactcaaaacccttcctagaggactacttctcctggcaaggctccattcccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ctctaaaaactcaaaacccttcctagaggactacttctcctggcaaggctccattcccat 772
Query: 61 aggttctagaaccttctcaaacaacaccattagctggagaccaagtgctcaaataccaaa 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aggttccagaaccttctcaaacaacaccattagctggagaccaagtgctcaaataccaaa 712
Query: 121 taccaaagtgttccacagtcctacaggcaagggattgccaaagaaacatgaaatgctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 taccaaagtgttccacagtcctacaggcaagggattgccaaagaaacatgaaatgctcta 652
Query: 181 tatatttgcatgcagtttgtataaaatatataggcatattagatgaggaaactaagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tatatttgcatgcagtttgtataaaatatataggcatattagatgaggaaactaagaatg 592
Query: 241 ctagcaattatttctcagttttttcacctttatttttattttaaaaagaaatcctgtgtg 300
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 591 ctagcaattatttctcagttttttcacctttatttttatactaaaaagaaatcctgtgtg 532
Query: 301 atttttcttaacagagaaaaatgacttaaaatgtaaaatgatgctcaccatttggtatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atttttcttaacagagaaaaatgacttaaaatgtaaaatgatgctcaccatttggtatgt 472
Query: 361 gacaaacatgaagctattgtcggatattagagataagaaaatgtggtaaattgacggcat 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gacaaacatgaagctattgttggatattagagataagaaaatgtggtaaattgacggcat 412
Query: 421 gtatatgtatatacattcatacatagatattgtctttgggttttgaatttcaaaacaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtatatgtatatacattcatacatagatattgtctttgggttttgaatttcaaaacaaaa 352
Query: 481 tatttcaagcttttcagtgaagatattcttaagaa 515
|||||||||||||||||||||||||||||||||||
Sbjct: 351 tatttcaagcttttcagtgaagatattcttaagaa 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
