BAC Information

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BAC

Clone NameMSMg01-085H15
Chromosome10 (Build37)
Map Location 23,998,240 - 23,998,414
singlet/doubletsinglet
Overlap geneMoxd1
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
Downstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085H15.T7 (MSMg01no085_h15.b1)MSMg01-085H15.TJ (MSMg01no085_h15.g1)
ACCAG305049AG305050
length1,1411,202
length of high quality
(start - end)
175 (62 - 236)39 (118 - 156)
definitionCHROMAT_FILE: MSMg01no085_h15.b1 PHD_FILE: MSMg01no085_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:18 2005CHROMAT_FILE: MSMg01no085_h15.g1 PHD_FILE: MSMg01no085_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCATAAAAAGTCCATNNNAGNNAGGAACANGNGAANCCAGACCTTAAA
AAAAATCCCCACCATTCCAGACATGTATTCTGCACCCAGATGAAATGGGA
GTCTGGGCCGTGGGTATGATCCTCGGTCAAAGAGGTCCTCATGATGCTGC
TGCAGTCCCTGCATTCTCGGAGCTCAGCAATGCTTCTGCTTTCGCAGGCA
CTGCACTCGGAAACCCTTGCTTGCTCTCTACGTCGGACTGTGGACATAGA
TGCAGCATCTTCTTTCGTTTTCTCCTAGGACATTGCATTTGTAACTTCTG
TGAATTTTCTTTTTGGTAGGAAAAATCCAAGCATTTTTTTTTTTGCAGGC
AGAGGCCCGAAGCGCTCTGCTAAGAGACTCAACTCCCCCAATTCTTTTCT
GCATTATCTACTTGTACTCTTCGGCCTCACATCTATGTAATTAACGAATC
CTCTTTGCCGTTGTTTGTGCTTTATCTTTATTAGTTCTCAAGTCCTGAAG
TCATATTCTTGTTTTTCATTCGTTTTTAACATGTTGTTTATGTTTTCTAA
TGTCTCTTATATTTTTTTTCGTTTTTTTTTCTCTTTCTTTTTTTTACTTT
TTTATCCTTATTTTTTTTTCATATTTTTTTTCTCTTTATCTTTTTTTTTA
TTATTTTTCTTCTTACTTTTTTTTTCTTTTTTTTCCTTAACTCTTTTTTT
CTTCTTCCCGTCTTTTTTTTTTTTTTCTTTTATCTTTTAAGACTCTTCCT
ATTTTTATTTTTTTTTTCTATCCTCTTATTCTTAATTTTTTTATATTTAT
TTTTTTTTTTATTTTTATTCTCACATTTTTTTTTTTGATATTATCTTCCT
TTTTCTTTTTTACTTTTATTTCTTTTTTTTTCTCTTGCTTTTTCTCTTTT
TTCTATTTTTTCTTCTTTCTTTTTTTTCTTTTTTTCTTTCTTTTTTATTT
CTTTTTATCCTTTTTTTTCTTTTTTTAAATTCTTTTTTTTAATATAATTA
TTAATCTTTACTTTTTTATAAATTTTCTTCTTCATTTCTATCATCTCTCT
ATTTCTTTTTTTCTCTGTTTTCTTTACTTTTTTCTTATTTTATATTTTCT
CTTATTTTCTTTCTATCATTCTTCTCTTTTCTTTCTTATTT
AGAGTGGAGCTGGCGGCGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTAAAAAAAGATGTGTGTCATTAGGGGTTGGCTTTGAAA
AACCAAAGATATGTGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCACTCACTATATCTCTCTCTATATCTCTCTACATATAACCA
TAAAGAACACCTAAGCGTGAGAATAAAGAAATATGTTTCAATCACTGATC
AAGAGAAAGAATGAAAGAAAAAATGAACCACAAAAAGATGAAAATGGATA
AAACCTTAGAAAGTGTAAATCACACAACAAATAAAAATAAAAACCAAAAA
AATACAAAGGTTGGGGAGACAAATAAAAGCAATATAAGATTGTTTAAAAC
ATGGAAGGAAAAGCAGAATATGAAAATAAAAATAAAAAGACCATAGAAAA
ATATATTATCACACAAAAATGAAAAGAACAAAAAAGGAAAACAAAAAACA
AACAGGGGAAAAAAAGAATAAAAAAAAGGGAGAAAAAAAAAGAAAAAAAG
GAAAAGAAAGCCATAAAATTCAAAAAAAAAAAAAAGAACAAAGAAAGAGA
AAGAAAAAAAAAAAATACAAAAAAGAAAGAAAGATAAAAAAATAAATAAG
ATAAAAAATAAAAAAAAACAAATAAAAACAATAAAAGAATTCAAAAAAAA
AACAAAAAGAAAAATAAAATAAAAAAAAAAAAAAAAAAAATAAAAAAATA
ATAAAAAAAAAAAAATAAAATTTAATAAATAAATAAAAATAAAATAATAA
TAAAATAAAAAAAAAGAAAAAATAAATAACATTAAAAAAAATAGTCAACA
AAAATAAAAAAAAAAATAAAAAAATAAAACAAAAAAAAACCAAAAAAAAA
AAAAAAAAAATAATAAAATAAATAAAAAAAAAAATTAAAAAATAAAAAAA
AAAAATAATAAAAATAATAAAAAAAAAAAAAAAATATAAAAAATAAAAAA
AAAAAAAAAAAATATAAAATATATAAAAAAATAACAAAACCAATAAAATA
TAAAAAAAAAAAAATCAGAAAAATAATAATATAAATATAACTATATAACA
TAATAAAATAAATATAAATTAAAGAAATAAATAAAAAAATATAAAAAATA
AAAATATAATAATAAAAGAAAAAAATATAATATATAATAATAGAAAACAC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_h15.b1 MSMg01no085_h15.b1 CHROMAT_FILE:
MSMg01no085_h15.b1 PHD_FILE: MSMg01no085_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:18 2005
         (175 letters)



>mm_chr10_23998040_23998614
          Length = 575

 Score =  292 bits (151), Expect = 8e-84
 Identities = 169/175 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattccagacatgtattctgcacccagatgaaatgggagtctgggccgtgggtatgatc 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 375 ccattccagacatgtattctgcacccagatgaaatgggagtttgggccgtgggtatgagc 316

                                                                       
Query: 61  ctcggtcaaagaggtcctcatgatgctgctgcagtccctgcattctcggagctcagcaat 120
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 ctcggttaaagaggtcctcatgatgctgctgcagtccccgcattctcggagctcagcaat 256

                                                                  
Query: 121 gcttctgctttcgcaggcactgcactcggaaacccttgcttgctctctacgtcgg 175
           ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 255 gcttctgctttcgcaggcactacactcagaaacccttgcttgctctctacgtcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)