MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085J11
Chromosome	10 (Build37)
Map Location	92,672,368 - 92,759,892
singlet/doublet	doublet
Overlap gene	Pctk2, Elk3
Upstream gene	LOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314
Downstream gene	LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667203 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 3 Proteins pseudo : _no_value

name	LOC216229 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:216229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100041814 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041814
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Nedd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17997 MGI:97293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm872 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380653 MGI:2685718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	4930485B16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380654 MGI:1922208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 1 Protein

name	EG667314 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667314 MGI:3644109
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Pctk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237459 MGI:97517
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13713 MGI:101762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein

name	Lta4h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hal (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amdhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins

name	Ccdc38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237465 MGI:2444738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snrpf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins

name	LOC100041873 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Ntn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57764 MGI:1888978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667338 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins pseudo : _no_value

name	LOC100041907 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins pseudo : _no_value

name	Usp44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327799 MGI:3045318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Metap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vezt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215008 MGI:2143698
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13998 MGI:1261419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr2c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22025 MGI:1352465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufa12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66414 MGI:1913664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG215472 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215472 MGI:3648918
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nedd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679031 GeneID:17997 MGI:97293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neural precursor cell expressed, developmentally down-regulated gene 1 transcript_id : NM_008682.1

name	Gm872 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388536 GeneID:380653 MGI:2685718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : gene model 872, (NCBI) transcript_id : XM_354560.4

name	4930485B16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388537 GeneID:380654 MGI:1922208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 1 Protein product : RIKEN cDNA 4930485B16 gene transcript_id : XM_989129.1

name	EG667314 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388567 GeneID:667314 MGI:3644109
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG667314 transcript_id : XM_001003594.1

name	Pctk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122812 GeneID:237459 MGI:97517
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PCTAIRE-motif protein kinase 2 transcript_id : NM_146239.1

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305022 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_013508.1

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45383917 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_205536.1

name	LOC100041854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261015 GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein product : similar to Ubtf protein transcript_id : XM_001477121.1

name	Lta4h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116734869 GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leukotriene A4 hydrolase transcript_id : NM_008517.2

name	Hal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981709 GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histidine ammonia lyase transcript_id : NM_010401.3

name	Amdhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388541 GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins product : amidohydrolase domain containing 1 transcript_id : XM_125854.4

name	Ccdc38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802738 GeneID:237465 MGI:2444738
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 38 transcript_id : NM_175488.4

name	Snrpf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388566 GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins product : small nuclear ribonucleoprotein polypeptide F transcript_id : XM_892627.2

name	LOC100041873 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261017 GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100041873 transcript_id : XM_001477148.1

name	Ntn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328256 GeneID:57764 MGI:1888978
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : netrin 4 transcript_id : NM_021320.2

name	Usp44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344982 GeneID:327799 MGI:3045318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 44 transcript_id : NM_183199.2

name	Metap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83779008 GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methionine aminopeptidase 2 transcript_id : NM_019648.3

name	Vezt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365165 GeneID:215008 MGI:2143698
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vezatin, adherens junctions transmembrane protein transcript_id : NM_172538.3

name	Fgd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37693996 GeneID:13998 MGI:1261419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 6 transcript_id : NM_053072.2

name	Nr2c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982759 GeneID:22025 MGI:1352465
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group C, member 1 transcript_id : NM_011629.2

name	Ndufa12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354746 GeneID:66414 MGI:1913664
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 transcript_id : NM_025551.2

name	EG215472 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374877 GeneID:215472 MGI:3648918
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG215472 transcript_id : NM_174999.2

name	Nedd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679032 CCDS:CCDS24123.1 GeneID:17997 MGI:97293
definition	codon_start : 1 exception : mismatches in translation product : neural precursor cell expressed, developmentally down-regulated gene 1 protein_id : NP_032708.1

name	Gm872 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027669 GeneID:380653 MGI:2685718
definition	codon_start : 1 product : hypothetical protein protein_id : XP_354560.3

name	4930485B16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388538 GeneID:380654 MGI:1922208
definition	codon_start : 1 product : hypothetical protein LOC380654 protein_id : XP_994223.1

name	EG667314 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388568 GeneID:667314 MGI:3644109
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003594.1

name	Pctk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122813 GeneID:237459 MGI:97517
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : PCTAIRE-motif protein kinase 2 protein_id : NP_666351.1

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45383918 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : ELK3, member of ETS oncogene family isoform b protein_id : NP_991099.1

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305023 CCDS:CCDS24124.1 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : ELK3, member of ETS oncogene family isoform a protein_id : NP_038536.1

name	LOC100041854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261016 GeneID:100041854
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477171.1

name	Lta4h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116734870 CCDS:CCDS24125.1 GeneID:16993 MGI:96836
definition	EC_number : 3.3.2.6 GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0004301 - epoxide hydrolase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004463 - leukotriene-A4 hydrolase activity [Evidence IEA]; GO:0004179 - membrane alanyl aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006954 - inflammatory response [Evidence ISS]; GO:0019370 - leukotriene biosynthesis [Evidence IEA] [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : LTA4 hydrodase product : leukotriene A4 hydrolase protein_id : NP_032543.2

name	Hal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754152 GeneID:15109 MGI:96010
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0016211 - ammonia ligase activity [Evidence IEA]; GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0006548 - histidine catabolism [Evidence IEA]; GO:0006547 - histidine metabolism [Evidence IEA] codon_start : 1 note : histidinemia product : histidine ammonia lyase protein_id : NP_034531.1

name	Amdhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20865128 GeneID:71761 MGI:1919011
definition	codon_start : 1 product : amidohydrolase domain containing 1 protein_id : XP_125854.1

name	Ccdc38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541988 CCDS:CCDS24127.1 GeneID:237465 MGI:2444738
definition	codon_start : 1 product : coiled-coil domain containing 38 protein_id : NP_780697.2

name	Snrpf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027678 GeneID:69878 MGI:1917128
definition	codon_start : 1 product : small nuclear ribonucleoprotein polypeptide F protein_id : XP_897720.1

name	LOC100041873 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261018 GeneID:100041873
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477198.1

name	Ntn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946626 CCDS:CCDS24128.1 GeneID:57764 MGI:1888978
definition	GO_component : GO:0005604 - basement membrane [Evidence ISS] [Evidence IDA] GO_process : GO:0016322 - neuron remodeling [Evidence IDA] codon_start : 1 exception : mismatches in translation note : beta-netrin product : netrin 4 protein_id : NP_067295.1

name	Usp44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147264 CCDS:CCDS24129.1 GeneID:327799 MGI:3045318
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific peptidase 44 protein_id : NP_899022.1

name	Metap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789873 GeneID:56307 MGI:1929701
definition	EC_number : 3.4.11.18 GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO:0004239 - methionyl aminopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : eIF-2-associated p67; initiation factor 2-associated protein (p67); peptidase M 2 product : methionine aminopeptidase 2 protein_id : NP_062622.1

name	Vezt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542087 GeneID:215008 MGI:2143698
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0043009 - embryonic development (sensu Vertebrata) [Evidence IMP] codon_start : 1 product : transmembrane protein vezatin protein_id : NP_766126.2

name	Fgd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37693997 GeneID:13998 MGI:1261419
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : ethanol decreased 4 product : FYVE, RhoGEF and PH domain containing 6 protein_id : NP_444302.3

name	Nr2c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982760 CCDS:CCDS24131.1 GeneID:22025 MGI:1352465
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0042826 - histone deacetylase binding [Evidence IPI]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence ISS] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : early embryonic nuclear receptor; 80-3 cNDA; orphan receptor, TR2-11; nuclear receptor subfamily 2, group H, member 1 product : nuclear receptor subfamily 2, group C, member 1 protein_id : NP_035759.2

name	Ndufa12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228985 CCDS:CCDS24132.1 GeneID:66414 MGI:1913664
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : 13kDa differentiation-associated protein protein_id : NP_079827.2

name	EG215472 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239389 GeneID:215472 MGI:3648918
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC215472 protein_id : NP_778164.1

name	LOC216229 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:216229
definition	number : 1 pseudo : _no_value

name	LOC100041814 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041814
definition	number : 1 pseudo : _no_value

name	LOC667203 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261115 GeneID:667203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 3 Proteins product : hypothetical LOC667203 pseudo : _no_value transcript_id : XR_034579.1

name	LOC667338 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261118 GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins product : similar to ribosomal protein L29 pseudo : _no_value transcript_id : XR_035700.1

name	LOC100041907 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261019 GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins product : similar to farnesyl pyrophosphate synthase pseudo : _no_value transcript_id : XR_033108.1

clone name	MSMg01-544O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-134O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002I12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085J11.T7 (MSMg01no085_j11.b1)	MSMg01-085J11.TJ (MSMg01no085_j11.g1)
ACC	AG305126	AG305127
length	1,147	1,247
length of high quality (start - end)	433 (50 - 482)	235 (119 - 353)
definition	CHROMAT_FILE: MSMg01no085_j11.b1 PHD_FILE: MSMg01no085_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:33 2005	CHROMAT_FILE: MSMg01no085_j11.g1 PHD_FILE: MSMg01no085_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:33 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(92,759,460 - 92,759,892)	(92,672,368 - 92,672,602)
sequence	CCCTTAAAGCGTTAAGAGCCAACCTCAAGCTAGGCCTGGTGCCTCTGGAC TGAAATCCCAGCTACTCAGAAGGCTGTGACAGGTACAAACTTGAACCTTG CAAGTTCAAGGTCAACTCAGAGTCTGTAGAGAATTCAGGATCAGCCTGCA CCTTACTCAGATTTTGACTCAAAAATTTAAAAAGTGAACAGAGCTATCAA CAGTTGTTGGTCCAGTGCGACTCCTAGATTCAATACCCCATTAAACAACA ACAACAACAAAAATCCTCTTGGGTGAAACTGGCATGTCTGTCTTTCTCTC TGTCTCTCTATCCCTCGCCATCAATAATCAATCTGTTTGTCTGTCTATTT CTACCTCTGTTCACTGAGGGAACTGGCCAAAAGAAATGTGGCAAAATGTC TTGTACTAATTTAATTTACTTTTACCTTTTGAGATAGGATCTCTGTGTAG CATAGGCTGTCCCAGAACTCACTCTGTAGACCAGGCTGGAACTCACTGAG ATCTGCCTGCCTCTACTTCCATGTGCCAGTATGCCCAGCTCATATTGACT AAACTGAACCCAGTCCTAGTGCCTCGAGTCACATAGTGGTAAGGTCAGAA ATCAAGGACACTTCCTGACTTGACTCTGCTGATTATGCCACTTTGACCTT TGAGTAACTCCCGTCTTGTTCTCTTTGATGTGTAATAATGTTTGTTTTCT CTTCCAGCGTTTTTTTTCCTTTCTTAAGTCTTGTACCCTTTAATAACTCT CCTCTTGCTGTCTTCTTCCATTACTCTTCATATTATTTTTTGTAGCTTCT TTCTTTTTCTTTTTGTTCACTTTTTATAATCTTTTATTTTATTCTTCCTT TTTTTTTTTATTTTTTTTATTTTTTCTTTTGTTTGTCTATATTTGTTTCT TTTTTTCTTTTTTATCTATTCTGTCTTCCTTTTCTTTTTTATTTTTTATT CTATATTACCTTTCTTCTCTTTTCCATTTTTTTCCTTTTATTCCTTTTCT TTTAAATCATTATACTCTTTTATTTATTCTTTCTTTTCTTCTCTTTTTCT TATTTTCTTTGTTTTTTTATCTTATATTTCCTTTTCGTTTTCTTTTTATT TTCATTTTTCTTTCTTATTCTCTTTTTCATATCTATTTCTCTATATT	ATATGGTAGCTGGCGCCCCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXCCTTTTGGTGGCAATAATGGCTGACTCCAGCTTGCTTATT CTCGTGCTAGAAATTCCGACCAACATGTTTGCCAGTGATGTTTAGAGATA AAAGAGGCACGGTGTCCACCATGGTAGGTGGTTTTTGGAGCACATTCCTC TGAGTATTTGATTACCAGACAAACGTTTTTATTAAAACTGAGTAATGGAT GATACACTGACATTTTAGAACTAATTAACAATTTAGTTCTAATTGGATGT TTTCTGGAATATTTTGGTAATTATCTTCAAACATGGTTAGTTTATAACAC ATGGTGAGATGTTAAAAATATCCACTATTTTGAAAATAGTGTTTTTTGTC TATTTGTGACAGACCTTAACAAAGAAAGACTTAAGAGTCACTGTCTTCCT CATCATAGAGACCTCTAGTTGTACACAGACAGACCTTAACTACCATACTC AGTTGCATGCTCATTCTCTTTGTGTAATGTTGTGTTTCTTCAATTATTTT TCCAGTATTTTTATGTCTCCTTTTTTTTTTTCCTTTTTGTTTTGTCTTTT TATTTGTTCTGTTACTTATTTTTCCTTCTTGTATTATTTTTTTTATTCTT CTCTTTTTTCTCTTTTCTCTCTTTTTCTTTTCTTTTTTTTTTTCTTTCTT ATGTTCTCTTTTTCTTTCCTTTAATTTTTTCTTTTTTTTATTTTTTTATA TTTCTCTTTATTTCTTCTCCCTTTTTTTTTTCTTTTTTATATTCTTTATT TTCCATTTTTTATCCTTAACTTTTTTCTTTTTCTTTTTTCTTTATTTTTT CTTTTTTTTATTTTTTTTTATCTTCTTTTTTATTTATCTTTTTTTTTTTC TTTTTCCTTTTTTTCCTTAGTTTTTTTTCTCTTTTTCTTCTTCTTATTTT TTCCTTTCTCTCTTTTTTTATTTTTTTTTTCTTTTTTTTTTATTTTTTTT TTATCTTTTTCTTTTCTTCTTTCTTTTTTTTCTTCTTTTCTTTTCTTTTT CTTTTATTGTCTATCTTTTTTTTTTTCCCTTTTTTCTTTTCTTCTTCTTT TATTTATCTTTTTTTTCTTTTTTTATTCTTTCTTTTTTTTCTTTCTTCTC TATTCCTTTCCTTTGTCCTTTTCTTTCATAATTTTTTTGTAATACTTTTT TCTTTCTTTTTTTCTTCTTTTTTATTCTATTTTCTTTTCTTTTCTTC
quality values	Open. Hide. 9 9 9 8 8 8 11 9 10 9 9 9 19 23 35 33 33 33 41 41 50 53 36 35 35 35 35 35 36 47 47 47 41 50 42 47 31 27 11 10 9 11 11 11 9 9 10 12 12 16 20 28 31 39 39 40 43 44 43 37 37 43 59 59 50 47 47 37 37 30 37 37 36 43 43 53 57 43 48 42 39 39 41 46 46 43 43 48 48 48 59 59 59 59 59 54 57 57 59 54 54 59 57 57 57 57 57 57 57 57 57 57 48 42 42 35 30 24 30 30 43 44 44 57 57 46 46 43 43 43 57 57 59 59 57 48 48 48 57 57 57 57 54 54 52 57 57 52 52 52 57 57 57 68 68 57 57 57 52 52 52 59 59 59 59 59 57 57 57 57 57 44 43 43 43 57 57 57 52 52 52 57 57 52 52 52 57 57 57 52 52 52 57 57 57 57 57 57 57 57 43 43 35 35 43 57 57 59 42 41 39 43 43 44 57 45 45 52 52 52 57 62 62 62 62 43 39 39 43 38 39 35 35 35 43 43 62 62 62 62 62 62 43 43 39 43 43 43 44 43 43 43 43 43 35 35 35 43 34 41 27 26 27 27 35 35 43 44 44 62 52 45 45 45 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 43 43 15 29 15 20 20 28 15 13 11 15 15 30 30 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 33 26 12 12 15 15 15 20 35 35 43 43 43 43 32 23 17 15 15 13 13 13 13 15 24 35 43 39 29 27 35 35 20 19 32 38 24 28 31 43 43 42 52 43 44 43 31 31 39 43 43 52 52 57 38 28 15 15 15 36 38 38 24 19 12 12 38 38 43 43 23 23 23 32 28 33 35 38 42 50 52 43 43 43 43 43 43 25 29 21 26 19 11 11 12 19 32 32 24 20 15 15 24 19 18 15 15 20 31 28 28 27 28 33 24 24 18 13 14 24 24 13 13 12 21 28 19 19 20 20 20 26 28 14 14 12 22 11 12 19 32 28 39 35 35 35 39 39 28 28 18 15 20 18 22 26 24 16 16 20 20 28 28 12 12 12 12 9 8 10 8 8 8 11 12 12 13 18 12 15 12 12 12 11 19 21 21 11 11 11 8 8 8 8 8 8 10 11 12 10 9 9 8 8 8 8 8 10 16 20 15 15 11 9 9 11 12 15 15 10 8 8 8 8 8 10 11 11 10 11 11 12 12 12 17 11 11 10 10 10 13 13 11 13 13 15 21 15 11 11 19 19 15 19 20 28 20 23 23 14 12 15 15 14 12 17 10 11 12 23 15 11 11 10 10 8 8 8 10 12 18 17 15 9 9 9 10 13 17 13 8 8 8 8 8 8 10 11 16 12 11 11 11 15 10 10 8 8 8 8 6 6 8 6 9 9 9 9 9 10 8 8 8 10 8 6 6 6 6 8 8 9 9 10 8 8 13 8 8 8 8 6 6 8 8 8 8 8 8 10 11 18 15 10 10 10 10 10 10 10 10 10 10 10 8 8 8 8 8 6 7 8 8 8 9 8 10 10 13 10 8 8 6 6 6 10 10 10 9 10 10 10 10 9 10 9 9 9 9 9 9 9 12 10 10 10 8 8 8 8 6 6 6 6 8 8 8 10 10 9 10 10 11 11 11 14 16 21 10 10 8 8 8 8 10 8 8 8 12 8 9 9 15 19 10 10 8 8 10 12 12 8 8 8 10 10 10 11 11 11 11 11 16 14 14 10 10 9 9 9 9 10 10 8 8 8 8 8 8 8 8 11 15 12 10 12 11 12 13 8 8 8 13 17 14 8 8 7 7 10 8 10 15 12 10 8 8 8 8 8 10 13 15 19 19 13 13 13 8 8 8 10 9 8 6 6 6 6 6 7 10 8 8 8 8 11 10 8 8 8 10 10 8 8 8 8 8 11 9 8 8 8 8 9 11 11 11 12 11 11 8 8 8 10 10 8 8 9 10 22 8 10 7 7 8 12 10 10 8 9 9 8 16 13 11 6 6 8 8 8 6 6 8 8 8 6 6 8 12 12 14 11 12 10 9 9 9 8 10 12 12 8 8 8 8 8 8 8 10 10 10 6 7 7 6 8 8 10 8 8 7 7 7 7 10 10 10 8 8 8 8 8 9 9 8 10 10 10 10 8 8 8 6 6 6 8 10 8 8 8 8 8 10 8 8 8 8 8 9 10 9 11 10 9 8 8 6 6 8 8 8 8 8 8 8 8 8 7 7 6 6 8 10 8 8 8 8 8 8 9 9 9 10 9 9 8 8 8 8 6 6 6 8 8 8 8 8 7 6 8 8 12 10 6 6 6 6 8 10 10 10 10 10 12 9 9 10 10 10 8 10 8 10 10 10 12 12 8 8 8 10 13 8 8 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 10 9 8 8 8 8 8 8 8	Open. Hide. 6 6 6 8 8 8 8 8 8 8 10 8 8 13 15 9 9 6 6 6 6 6 8 12 24 24 19 22 8 8 8 19 19 12 19 26 35 35 36 36 36 36 37 37 35 34 40 40 44 44 53 50 50 50 50 59 23 23 9 9 12 12 15 15 14 16 11 11 11 12 15 12 12 12 19 28 34 37 39 37 44 44 53 53 53 53 53 50 38 38 36 36 31 31 33 33 33 33 25 21 11 10 10 10 10 10 10 17 16 21 23 28 28 21 24 15 15 15 12 20 34 30 43 36 39 39 44 48 50 57 57 54 42 42 42 48 46 48 54 57 50 43 43 35 35 37 44 44 57 48 43 43 41 41 32 32 30 44 32 32 32 32 42 44 39 39 41 43 41 48 42 48 41 41 41 41 41 47 48 57 57 57 57 59 59 59 57 54 54 57 57 57 57 57 57 57 57 57 57 57 57 57 50 50 37 43 50 57 57 57 57 57 57 43 43 32 25 27 32 43 31 31 38 44 50 59 59 57 57 57 57 43 43 24 24 23 28 41 44 44 28 28 32 43 43 43 38 38 38 50 50 52 57 57 37 43 27 38 26 27 20 27 28 44 38 59 43 41 31 43 43 50 47 47 50 57 44 36 36 32 32 37 32 32 29 27 28 25 32 39 44 44 39 47 43 39 37 47 35 35 35 47 47 47 47 43 43 37 44 44 47 48 48 42 42 32 22 22 11 15 15 34 34 48 29 21 11 10 10 17 18 31 35 35 35 32 31 37 30 32 32 37 39 43 39 39 32 30 30 25 20 20 31 22 22 11 11 11 18 19 13 11 11 15 19 28 28 31 33 39 37 34 28 23 23 28 34 39 39 39 28 24 18 22 20 23 28 28 22 15 13 16 11 9 10 10 8 8 9 19 17 33 34 39 39 37 43 37 39 37 28 28 28 33 39 28 26 15 15 12 11 11 11 11 12 12 12 12 15 18 28 21 12 11 8 8 8 12 8 10 10 21 19 25 25 36 31 22 17 17 14 14 12 21 12 14 13 15 12 12 12 10 8 8 8 8 8 11 11 24 30 28 24 12 12 12 12 12 15 12 12 12 12 15 15 27 27 12 11 11 16 24 24 16 32 15 32 21 27 11 11 11 20 21 36 25 32 24 24 24 28 13 16 16 30 30 35 35 35 36 40 35 35 24 24 13 12 12 12 10 10 8 8 8 8 11 8 8 8 8 10 10 13 13 29 27 36 24 14 8 8 8 8 8 14 14 14 21 25 31 28 24 10 10 10 10 10 9 10 9 9 21 21 34 24 19 13 9 8 8 12 11 10 11 10 8 10 8 10 10 10 10 14 12 13 9 9 12 10 8 8 8 8 8 8 8 8 10 12 10 8 8 10 10 8 8 10 10 10 14 20 10 10 10 10 11 11 11 12 18 18 11 11 10 11 11 11 18 13 14 13 11 7 8 6 6 8 6 8 8 8 8 11 11 12 10 8 8 8 8 9 10 10 10 12 9 8 8 8 8 8 8 10 8 8 8 6 6 8 12 11 19 14 21 10 14 14 16 19 16 16 10 8 6 7 8 8 9 8 8 8 6 6 8 8 6 6 6 6 10 8 10 15 11 10 10 8 8 8 8 10 9 10 10 10 17 11 9 9 10 10 10 10 10 15 23 10 10 8 8 8 8 8 10 10 13 8 8 8 9 8 10 8 6 6 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 10 9 11 11 12 13 10 10 8 8 10 10 15 15 13 13 6 6 8 8 8 10 8 7 8 8 8 8 10 10 10 9 9 9 9 10 9 10 10 9 10 8 8 8 8 8 8 9 11 15 12 11 11 8 8 6 7 11 12 12 11 9 9 12 12 13 10 6 6 8 13 6 6 8 10 15 13 11 8 6 8 10 8 8 9 9 11 11 9 9 11 9 10 10 12 13 10 6 6 8 13 13 10 10 11 17 16 8 8 8 13 15 11 8 8 8 8 8 10 12 10 10 10 9 9 10 10 9 8 8 8 8 8 8 9 11 8 8 8 10 18 22 16 12 9 9 9 9 7 7 8 10 10 15 10 12 10 10 8 8 10 12 14 8 8 8 8 6 6 8 8 8 9 9 9 11 12 13 10 16 12 11 10 8 8 6 6 8 8 8 8 8 12 16 18 12 12 9 9 10 15 15 10 8 8 12 16 17 11 10 10 9 10 11 11 18 10 7 6 6 6 8 8 8 8 13 15 13 11 12 9 9 9 10 10 16 23 15 11 9 9 10 8 8 8 8 8 9 9 10 10 10 10 10 10 19 28 8 8 7 6 8 9 9 8 10 19 12 12 15 10 10 7 7 10 8 10 11 9 9 8 10 10 8 8 8 7 7 8 8 6 6 8 8 11 15 15 13 10 10 10 19 13 9 9 9 11 11 12 12 12 8 8 8 8 8 10 10 6 6 8 10 11 11 11 11 11 10 8 6 6 8 8 8 8 6 7 10 13 11 12 11 9 8 8 8 8 8 10 12 10 10 10 10 10 13 9 7 8 10 10 8 8 10 14 22 12 8 8 6 6 8 8 13 13 9 10 8 8 6 6 8 6 6 8 12 12 10 10 6 6 10 7 9 9 9 9 9 12 12 10 8 9 11 10 8 8 8 8 8 8 8 8 13 10 8 6 6 6 6 7 6 8 8 8 8 8 12 8 8 6 7 8 8 7 7 10 10 9 7 7 6 8 8 8 8 9 13 15 14 14 9 9 9 8 8 6 6 8 8 8 7 8 15 14 15 15 10 10 11 10 9 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_j11.b1 MSMg01no085_j11.b1 CHROMAT_FILE:
MSMg01no085_j11.b1 PHD_FILE: MSMg01no085_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:33 2005
         (433 letters)



>mm_chr10_92759192_92760024
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaatcccagctactcagaaggctgtgacaggtacaaacttgaaccttgcaagttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgaaatcccagctactcagaaggctgtgacaggtacaaacttgaaccttgcaagttcaa 642

                                                                       
Query: 61  ggtcaactcagagtctgtagagaattcaggatcagcctgcaccttactcagattttgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggtcaactcagagtctgtagagaattcaggatcagcctgcaccttactcagattttgact 582

                                                                       
Query: 121 caaaaatttaaaaagtgaacagagctatcaacagttgttggtccagtgcgactcctagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaaaatttaaaaagtgaacagagctatcaacagttgttggtccagtgcgactcctagat 522

                                                                       
Query: 181 tcaataccccattaaacaacaacaacaacaaaaatcctcttgggtgaaactggcatgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcaataccccattaaacaacaacaacaacaaaaatcctcttgggtgaaactggcatgtct 462

                                                                       
Query: 241 gtctttctctctgtctctctatccctcgccatcaataatcaatctgtttgtctgtctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 gtctttctctctgtctctctatccctcgccatcaataatcaatctgtctgtctgtctatt 402

                                                                       
Query: 301 tctacctctgttcactgagggaactggccaaaagaaatgtggcaaaatgtcttgtactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctacctctgttcactgagggaactggccaaaagaaatgtggcaaaatgtcttgtactaa 342

                                                                       
Query: 361 tttaatttacttttaccttttgagataggatctctgtgtagcataggctgtcccagaact 420
           ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttaatttaattttagtttttgagataggatctctgtgtagcataggctgtcccagaact 282

                        
Query: 421 cactctgtagacc 433
           |||||||||||||
Sbjct: 281 cactctgtagacc 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no085_j11.g1 MSMg01no085_j11.g1 CHROMAT_FILE:
MSMg01no085_j11.g1 PHD_FILE: MSMg01no085_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:33 2005
         (235 letters)



>mm_chr10_92672168_92672802
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaacatgtttgccagtgatgtttagagataaaagaggcacggtgtccaccatggtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaacatgtttgccagtgatgtttagagataaaagaggcacggtgtccaccatggtagg 260

                                                                       
Query: 61  tggtttttggagcacattcctctgagtatttgattaccagacaaacgtttttattaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtttttggagcacattcctctgagtatttgattaccagacaaacgtttttattaaaac 320

                                                                       
Query: 121 tgagtaatggatgatacactgacattttagaactaattaacaatttagttctaattggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtaatggatgatacactgacattttagaactaattaacaatttagttctaattggat 380

                                                                  
Query: 181 gttttctggaatattttggtaattatcttcaaacatggttagtttataacacatg 235
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gttttctggaatattttggtaattatcttaaaacatggttagtttataacacatg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information