Query= MSMg01no086_g01.b1 MSMg01no086_g01.b1 CHROMAT_FILE:
MSMg01no086_g01.b1 PHD_FILE: MSMg01no086_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:06 2005
(317 letters)
>mm_chr10_108204658_108205375
Length = 718
Score = 530 bits (274), Expect = e-155
Identities = 308/326 (94%), Gaps = 14/326 (4%)
Strand = Plus / Minus
Query: 4 ggaattcttgtttaggttttc-aaataatgcttacattgtct------tccccccccc-- 54
||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 580 ggaattcttgtttaggttttcaaaataatgcttacattgtctccgcccccccccccccgg 521
Query: 55 ----ttccttt-acattacttttattttcaaccccagcaccctggcatctccaacatgtc 109
||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 ccctttcctttaacactacttttatttttaaccccagcaccctggcatctccaacatgtc 461
Query: 110 tttgaaaacactgaaaactaaaagtttaactataaacagtgaggtcttgagggtaaggtt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttgaaaacactgaaaactaaaagtttaactataaacagtgaggtcttgagggtaaggtt 401
Query: 170 gtgtttgatagatttgggggacacaagtcaaggaagctgtcattctgcaattgtttattt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtgtttgatagatttgggggacacaagtcaaggaagctgtcattctgcaattgtttattt 341
Query: 230 acatggcatctttacagagacctttgctggcttgctgattctctccagcttcaggatata 289
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 340 acatggcatctttacagagacctttgctggcttgctgattctctccggcttcaggatata 281
Query: 290 tacagaggacaccaatttgtcactgg 315
||||||||||||||||||||||||||
Sbjct: 280 tacagaggacaccaatttgtcactgg 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space: 218372
Effective search space used: 218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_g01.g1 MSMg01no086_g01.g1 CHROMAT_FILE:
MSMg01no086_g01.g1 PHD_FILE: MSMg01no086_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:06 2005
(628 letters)
>mm_chr10_108079027_108080054
Length = 1028
Score = 1176 bits (608), Expect = 0.0
Identities = 623/628 (99%)
Strand = Plus / Plus
Query: 1 tcagggacctctgtgaatggggacgagggggccggtgcgttacctgatccttcatggtct 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagggacctctgtgaatggggatgagggggccggtgcgttacctgatccttcatggtct 260
Query: 61 tccctaagtctttcacgtctttcatgttgatggcgttcttccctcccttttcctttccct 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tccctaagtctttcacgtctttcatgttaatggcgttcttccctcccttttcctttccct 320
Query: 121 tcttcttgtttttctttttgaacaaatatttcttacagacacagaagcagcaggtcacga 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcttgtttttctttttgaacaaacatttcttacagacacagaagcagcaggtcacga 380
Query: 181 ctagaaggaccgcaactatggctatggcaattaaggcccacggtggcactggaagagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagaaggaccgcaactatggctatggcaattaaggcccacggtggcactggaagagaga 440
Query: 241 gagagagaaacggaacatcagcagcggaccagttaaccaaatgcagccaagacatccatg 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagagaaacggaacatcagcagtggaccagttaaccaaatgcagccaagacatccatg 500
Query: 301 cttggggctgggtttcccctgcgcttgttttgctccagtggtactgatctgtagggtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggggctgggtttcccctgcgcttgttttgctccagtggtactgatctgtagggtttt 560
Query: 361 atcagtgctgtgacctggcctggactcttcttctacctctatgtatactacatgccacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagtgctgtgacctggcctggactcttcttctacctctatgtatactacatgccacct 620
Query: 421 ttcccataggatccaagctaatttcctattaactcttcatttacacgtcgcttgccaggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcccataggatccaagctaatttcctattaactcttcatttacacgtcgcttgccaggc 680
Query: 481 agttttctagtttcactgtatcccagctctgctatcttgtacgaatctcctctctgcctc 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 agttttctagtttcactgtatcccagctctgccatcttgtacgaatctcctctctgcctc 740
Query: 541 tgcctcctcgtctattcaatagagataaagctggcaagtagcttagtgagtctcacaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcctcctcgtctattcaatagagataaagctggcaagtagcttagtgagtctcacaaga 800
Query: 601 attaagtattaagatgcagtggctagca 628
||||||||||||||||||||||||||||
Sbjct: 801 attaagtattaagatgcagtggctagca 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
