BAC Information

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BAC

Clone NameMSMg01-086H18
Chromosome10 (Build37)
Map Location 101,487,339 - 101,487,630
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086H18.T7 (MSMg01no086_h18.b1)MSMg01-086H18.TJ (MSMg01no086_h18.g1)
ACCAG305783AG305784
length694705
length of high quality
(start - end)
501 (30 - 530)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no086_h18.b1 PHD_FILE: MSMg01no086_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:15 2005CHROMAT_FILE: MSMg01no086_h18.g1 PHD_FILE: MSMg01no086_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCCTATATGCAGAGGATCCGCGGAATTCTTTGTTT
ATCTCTGAGCCCCATTTTTTAATGGGGTTATATGATTTTCTGGAGCCACC
TTCTTGAGTTATTTATATATATTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTTGTCTTATTG
ACAGTGTCTTTAGCCTTGCAGAAGCTTTGCAATTTTAAGAGGTCCCATTT
GTTGATTCTCGATCTTACAGTGCAAGCCGTTGCTGTTCTATTCAGGAATT
TTTCCCCTGTACCCATATCTTCGAGGATTTTCCCTACTTTCTCCTCTATA
AATTTCAGTGTCTTTGGTTTTATGTGGAGTTCCTTAATCCATTTAGATTT
GACCTTAGTACAAGGATATAGGAATGGATCAATTCACATTCTTCTACAGG
ATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTC
CACTGGATGGTTTTTGCTCCCTTGTCATAGATCAAGTGATCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTTATTCCATTGGGCTATTTGTTGCCG
CTATACCAGTACCATGCAGTATTTATCACAATTGCTCTGTACTAAATGTT
TAGGTCAGGCTTGGTGATTCCCCCAAAAGTTCTTTATCCTTGAC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTCCTGTAAAGTTGGCCTTACATGAAT
AAGAGAAGGGTCTATCAGCCCCATAACCACAATGCTACTATTTGACCAAT
GGGTATATGAATTATGTTTATAGTGATTAATGAATATTCTCCCATAGTAG
CCTGCATAGGTTTTCTAGGACTGTGAAAGAAAAACAAAGCAACAAAAACA
AACAAACTTAAAACAAAAACAAAATCTTAACTTGATTTTTGTAACTTCTG
TATGCTCCATCACTAAAATGTGTGATGTTTTCAGCAATAAAGTCTTAACA
TCTAGTTTTGCTGATTTATCAAGTTCAATGGCAATAAATAGTCTGTACTC
TTTCGGGTTTTTCTGGGATCCCCTTGACAAAGCTCACCATTGGTGTTGTA
ATTGAACATGATGTGGTGGTTTTCAAATACCTTCTAGATACTTATGTTTA
CAGACGTGTATTAGTCGCTTTCATAAGCCTTTGTCAGAGAAGCTTCTTTT
TGCCATGGACAGTGTACAATCAGGGAGAAATGCCAAAACTCCTAACAGGT
AAATGCGTTGAGAATAAGTGGCTATTGAAAACTTAACCCCCAATGGAAAT
TTTATATACTCCATCCAGGTTCACAAAGGCTTTCCATGGGGAAAGCGCTT
GTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_h18.g1 MSMg01no086_h18.g1 CHROMAT_FILE:
MSMg01no086_h18.g1 PHD_FILE: MSMg01no086_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:15 2005
         (294 letters)



>mm_chr10_101487139_101487832
          Length = 694

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcctgtaaagttggccttacatgaataagagaagggtctatcagccccataaccacaa 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cctcctgtaaagttggtcttacatgaataagagaagggtctatcagccccattaccacaa 260

                                                                       
Query: 61  tgctactatttgaccaatgggtatatgaattatgtttatagtgattaatgaatattctcc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tgctactatttgaccaatgggtatatgaattatgtttataatgattaatgaatattctcc 320

                                                                       
Query: 121 catagtagcctgcataggttttctaggactgtgaaagaaaaacaaagcaacaaaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagtagcctgcataggttttctaggactgtgaaagaaaaacaaagcaacaaaaacaaa 380

                                                                       
Query: 181 caaacttaaaacaaaaacaaaatcttaacttgatttttgtaacttctgtatgctccatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacttaaaacaaaaacaaaatcttaacttgatttttgtaacttctgtatgctccatca 440

                                                               
Query: 241 ctaaaatgtgtgatgttttcagcaataaagtcttaacatctagttttgctga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaatgtgtgatgttttcagcaataaagtcttaacatctagttttgctga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)