Query= MSMg01no086_k22.b1 MSMg01no086_k22.b1 CHROMAT_FILE:
MSMg01no086_k22.b1 PHD_FILE: MSMg01no086_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:31 2005
(567 letters)
>mm_chr10_90880934_90881900
Length = 967
Score = 1036 bits (536), Expect = 0.0
Identities = 560/574 (97%), Gaps = 11/574 (1%)
Strand = Plus / Plus
Query: 5 gaattcttacattaattacctaattttctttcttaactattttgtttttaatttcttcaa 64
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 194 gaattcttacattaattacttaattttatttcttaactattttgtttttaatttcttcaa 253
Query: 65 gactaacttctaatctttctattcaacttttaaagtttctgatgtcattttgaaaagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gactaacttctaatctttctattcaacttttaaagtttctgatgtcattttgaaaagaaa 313
Query: 125 acatcttttttttactgcatgggcttctttattctaaatagcaatgcgtccttgctcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acatcttttttttactgcatgggcttctttattctaaatagcaatgcgtccttgctcctt 373
Query: 185 gaattcactgtcttatgtttctctaaggatatttgagtttgctttttctttctttttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaattcactgtcttatgtttctctaaggatatttgagtttgctttttctttctttttttc 433
Query: 245 atattcatttactctatctcctcaaccttcccccttctcactttgggttcaactccctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atattcatttactctatctcctcaaccttcccccttctcactttgggttcaactccctta 493
Query: 305 ggcatgttacagacatgttacagacatgttacagacatgttacagacatgttatagccat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggcatgttacagacatgttacagacatgttacagacatgttacagacatgttatagccat 553
Query: 365 attacaggcatgttacagatatattacagacatgatacagacatgttatagacatgttac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attacaggcatgttacagatatattacagacatgatacagacatgttatagacatgttac 613
Query: 425 agacatgtta---------caga--tgttacagacatattacagacatgttacaggcatg 473
|||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 614 agacatgttatagatgttacagacatgttacagacatattacagacatgttacaggcatg 673
Query: 474 ttgcaggcacgttacaggcatgttacagatatattatagacatgttatagacatgttaca 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttacaggcacgttacaggcatgttacagatatattatagacatgttatagacatgttaca 733
Query: 534 gacatattacaggcatgttatacactttctacca 567
||||||||||||||||||||||||||||||||||
Sbjct: 734 gacatattacaggcatgttatacactttctacca 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_k22.g1 MSMg01no086_k22.g1 CHROMAT_FILE:
MSMg01no086_k22.g1 PHD_FILE: MSMg01no086_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:31 2005
(520 letters)
>mm_chr10_90993126_90994045
Length = 920
Score = 986 bits (510), Expect = 0.0
Identities = 513/514 (99%)
Strand = Plus / Minus
Query: 7 aattcattacagtgcacaccggtaatcacgaatattgactctccttgcagagaaatttct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aattcattacagtgcacaccggtaatcacgaatattgactctccttgcagagaaatttct 661
Query: 67 gacacaagactccctaagcacattaatgttctaatcatttttgactcattagatagggaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gacacaagactccctaagcacattaatgttctaatcatttttgactcattagatagggaa 601
Query: 127 ataatgtcaccacacagtggctattggtatatgtgttatgttttgttgtgcgtttggttt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ataatgtcaccacacagtggctattggtatatgtgttatgttttgttgtgcgtttggttt 541
Query: 187 atacagaactaaatgacatcataggccttaaggttgaaccaagacagatgactgtgtgat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atacagaactaaatgacatcataggccttaaggttgaaccaagacagatgactgtgtgat 481
Query: 247 aatgaagaagcataagaaaggactcgtttttttaaggacagatatttgcattgaagttac 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aatgaagaagcataagaaaggactcgtttttttaaggacagatatttgcattgaagttag 421
Query: 307 tgtgttcccataacacattacttcgtgaaagattctcataagaaacaagacagatttgga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtgttcccataacacattacttcgtgaaagattctcataagaaacaagacagatttgga 361
Query: 367 gagggaacattataacctccagcaaacaataaactgggatgtgccaagcagcccttcttg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagggaacattataacctccagcaaacaataaactgggatgtgccaagcagcccttcttg 301
Query: 427 agcaacataattcttcccatatatacaaatgttaagttgtttctataaaatatgaggata 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agcaacataattcttcccatatatacaaatgttaagttgtttctataaaatatgaggata 241
Query: 487 cattttgtggctttggttgatgtcattcattcct 520
||||||||||||||||||||||||||||||||||
Sbjct: 240 cattttgtggctttggttgatgtcattcattcct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
