BAC Information

Click to search

BAC

Clone NameMSMg01-087E06
Chromosome10 (Build37)
Map Location 77,228,870 - 77,229,194
singlet/doubletsinglet
Overlap genenone
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250
Downstream geneLOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087E06.T7 (MSMg01no087_e06.b1)MSMg01-087E06.TJ (MSMg01no087_e06.g1)
ACCAG306348AG306349
length701714
length of high quality
(start - end)
380 (45 - 424)113 (74 - 186)
definitionCHROMAT_FILE: MSMg01no087_e06.b1 PHD_FILE: MSMg01no087_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:19 2005CHROMAT_FILE: MSMg01no087_e06.g1 PHD_FILE: MSMg01no087_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTCTACCTCTATATACTACATTGGTGTACACATTTTTACATACC
AGACATGGGGGTGGGTGGAGATATATTTAAATAAGCTTTTGGTTACTGAA
GAAGTAGGGGGAATCAGCGTCATGGTTTTAATATACGTGGCCCAGCGAGT
GGCACTATTTGGAGGTGTGGACTTCTTGGAATAGATATGTCACTGAGGGT
GTGGGCTTTAAGACCCTCATCTTAGCTGCTTAGAAGTCAGTCTTCCACTA
GCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCAGCACCATGCC
TTCTTGTACAATACCTTGCTCCCACCTTGATGATGATGGACTGAACCTCT
GAACCTGTAAGCCAGCCCCATTCAAACGTTGTACTTTATAGGACTTGTCT
TGGTCATGGTGTCTGTTCACAGCAGCTAAAACTTAACTAAGACAGCCACT
GATCCTATAAATACCACCTACTAAAGCCCCGGGAAAGAACTTAAGCAGCA
CTGATTGTCGTTCTTATCAGGAATACCCCCCTCTGGAGATACACCGACTA
CCCCGATATCTTACCCCCTTTGCTCCCCCCTTATCTTGTGTTTCCAGGGG
CTCATCTCATCTCGATTTTGACCCTCTTTCCCCACCCTAACAACTTAGTT
T
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGCCTTAGCTTTCTGCATGCTGGG
ATTGCAGACTTGCACCATCACACCGGGCTGCAGATACGTTTGTGTGTAAG
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCCCTCCCAATG
ACAACTTTCTCTGTTATTCCTTACGCACTATTTACTTTCCGCTCCCTTGA
AACTGCCTCTTTAATTGCCCTGCAACTTCTAACTCACCACCTTTCCCTGC
CCCACGACCCCCACATATCTTTTTGTTTACTTCTGCCACCTCATTCCCAC
GATTCCTCTACCCCCCCCTCCCTACCCTCCCTCTCCCACCTTCTCTCAAC
CAATTACTCCCCCCCCCTATTTCTTCTCTCCCTCTTCCTCCCTACTTCAA
TCATCCCCCCCCCCCCTCTTATCCCCCTCACCTCCATATCTTACCTACCC
ACCAACCTTCAATATTCCCTCCCCTACCCCCCCCCCCTCCTTTCTCCACT
CATTTCTTTCCACCCCTTTTCCTCCCTCTTCCCCTCTCATTCCCTCCTAT
TTCCTCCCCTACTCCCCCCCCTCCCCTTTCCCCCCCCCCCTTTTTCTTCT
TTTTTACCCCCCTTCCCCCCCCCCCCCACCTATCCCCCTCCCCCCCTTTC
CCCCCTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_e06.b1 MSMg01no087_e06.b1 CHROMAT_FILE:
MSMg01no087_e06.b1 PHD_FILE: MSMg01no087_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:19 2005
         (380 letters)



>mm_chr10_77228870_77229651
          Length = 782

 Score =  538 bits (278), Expect = e-157
 Identities = 314/326 (96%), Gaps = 4/326 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctct-acctctatatac-tacattggtgtacacatttttacataccagacat 62
           |||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcttctctaacctctataaacacacattggtgtacacatttttacataccagacat 266

                                                                       
Query: 63  gggggtgggtggagatatatttaaataagcttttggttactgaagaagtagggggaatca 122
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 gggggtaggtggagatatatttaaataagcttttggttactaaagaagtagggggaatca 206

                                                                       
Query: 123 gcgtcatggttttaatatacgtggcccagcgagtggcactatttggaggtgtggacttct 182
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gagtcatggttttaatatacttggcccagcgagtggcactatttggaggtgtggacttct 146

                                                                       
Query: 183 tggaatagatatgtcactgagggtgtgggctttaagaccctcatcttagctgcttagaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 145 tggaatagatatgtcactgagggtgtgggctttaagaccctcatcttagctgcctagaag 86

                                                                       
Query: 243 tcagtcttccactagcagccttcagatg-aagatgtagaactctcagctcctccagcacc 301
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 85  tcagtcttccactagcagccttcaga-gaaagatgtagaactctcagctcctccagcacc 27

                                     
Query: 302 atgccttcttgtacaataccttgctc 327
           ||||||||||| ||||||||||||||
Sbjct: 26  atgccttcttggacaataccttgctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 782
Length adjustment: 9
Effective length of query: 371
Effective length of database: 773
Effective search space:   286783
Effective search space used:   286783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)