BAC Information

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BAC

Clone NameMSMg01-088B04
Chromosome10 (Build37)
Map Location 118,342,916 - 118,343,156
singlet/doubletsinglet
Overlap genenone
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
Downstream geneLOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B04.T7 (MSMg01no088_b04.b1)MSMg01-088B04.TJ (MSMg01no088_b04.g1)
ACCAG306924AG306925
length704674
length of high quality
(start - end)
241 (74 - 314)287 (56 - 342)
definitionCHROMAT_FILE: MSMg01no088_b04.b1 PHD_FILE: MSMg01no088_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:25 2005CHROMAT_FILE: MSMg01no088_b04.g1 PHD_FILE: MSMg01no088_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCC
GCGGAATTCAGTAGCCATTGCTCTGGATCTGAAGACTTGACATAGAATTG
ACTTAGGATCTAGAGGTTTCTGCTATCCAGGAGTTGGAATTGAAGATACC
AGAGCTGTTGCTATACCCCACCATCTTCTGCTTGGTAAGTATGGTATGGT
GGGATAAGGCAGTGTTGGTGGCTTCAAAGATGCTCTGGGTAGATCCCACC
AATAACCCAAAATAAAAAAAAACGTTTTGATCCCAGTCGCTGACTTACAA
GACTCATATACACAGATGAACAATGGGAATAACAGGGTTGGCTTTGCTTC
TTAACTCACGACATCTAGGGAGTGAGTTGTAAACCATGGTTACCCAGCAC
AGCTTTGTGTGATGGTGGAAATAGAATCTCATGACCCGTGGTCCCCAATA
GAGTAGTCACCCATGTATTATGGTTATGGTATCCCATCTGCTGACACCCA
TATGTCCTGACGGACCAATATTATTTTCATTTACTTTTTATCCCTTACCC
GAAGTTAGAAAAACCAATAGCTATTCTTAGTTCCCTTTTCTCTCTCTCAT
CTGATGGCCACAAATTCATAAACCCATTGTGCTCGCTTTCTTGTTTGGTC
TCTTTTGCGCCGCCTAACCCCCCCCGTCAATCCCCCCTTCCAGATGCCTC
CCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTATATGGATATAATCCTCAGTGCTAGCAGGAAGCAGGTCATCAC
CCTTATTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCG
GACATATTATAGATTCCTTTACCTTGGTAGAAACAGCCTTTGGAAGGTGT
CTGCGGGGCAAGGCAGGCAGGTAGGGGGGAAGGGAGGGACTGAAGCGTCG
GGAATCGAGGGGTCTCAAGTGGGAGGCAGCTGAGTCCTCAGTGGTGGTTC
AGTGACTAGGGTGGATATTTACTTCTGACTTAGCACTTTAGCCTGCTAAG
GGGGCAAGAGGTACCTGGATGGCATCAGTCTTCAGTCACCAGGCCCAGAA
GGATGGGAGGCTTTCCCGGGCAGGAGGAACATGACGGGGACTCACTTTAC
TTTGATTTGAAAGTCTAGGCAAAGTTGGTTCAGCCTATTCTCTTGTGTCC
TGCTTGTCCATGTGGCTCAGAGTCCTGCCAACCGGTGAGGCATTTGTTGC
CGTCCTTCCTAGTGTTTAGCGTTATCCCACCCCTTGTGTAGTTGTCGCTG
CGCCCCATTATCTTCCTTGTATATTCCGCCCGTCACTGCTAGTATTTGGC
CGTTTTCTGCCCTATTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b04.b1 MSMg01no088_b04.b1 CHROMAT_FILE:
MSMg01no088_b04.b1 PHD_FILE: MSMg01no088_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:25 2005
         (241 letters)



>mm_chr10_118342716_118343356
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatctgaagacttgacatagaattgacttaggatctagaggtttctgctatccaggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tggatctgaagacttgacatagaattgacttaggatctagaggtttctgctagccaggag 260

                                                                       
Query: 61  ttggaattgaagataccagagctgttgctataccccaccatcttctgcttggtaagtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaattgaagataccagagctgttgctataccccaccatcttctgcttggtaagtatg 320

                                                                       
Query: 121 gtatggtgggataaggcagtgttggtggcttcaaagatgctctgggtagatcccaccaat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gtatggtgggataaggcagtgttggtggtttcaaagatgctctgggtagatcccaccaat 380

                                                                       
Query: 181 aacccaaaataaaaaaaaacgttttgatcccagtcgctgacttacaagactcatatacac 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccaaaataaaaaaaaatgttttgatcccagtcgctgacttacaagactcatatacac 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)