BAC Information

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BAC

Clone NameMSMg01-088O24
Chromosome10 (Build37)
Map Location 128,129,432 - 128,129,658
singlet/doubletsinglet
Overlap geneRab5b
Upstream geneBC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589
Downstream geneCdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088O24.T7 (MSMg01no088_o24.b1)MSMg01-088O24.TJ (MSMg01no088_o24.g1)
ACCAG307565AG307566
length760773
length of high quality
(start - end)		227 (182 - 408)284 (126 - 409)
definitionCHROMAT_FILE: MSMg01no088_o24.b1 PHD_FILE: MSMg01no088_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:34 2005CHROMAT_FILE: MSMg01no088_o24.g1 PHD_FILE: MSMg01no088_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCNNNNNNNNNNNNNNCCCCCCCCCCCNTACCCCCNCCCCCCCCNCC
CTCCGCTCTCTATAATTGCGGCCGCTATCGACTCACTATTCCGAGAGATC
CGCGGAATTCTCTTTGTTTCTCGGGCTGGCCTCAAATTCAGAGATAGGAC
TGCCTCCAGAGTGCTGGAATTATTGTCCCGCACCACCACACCTGAGAAGC
AGTTTTTTAAAAAGGTCATTATCCCTGGCCTTGAGAAACAAGTTTAGAAA
TAAAGGTCACAGACAGTCTGGTATCCACAACCCCTAAGAGAAAGGTACAC
TCTAGCCACTCCAGAAACCTGTACTTTCCTCTCCTCACCGGGTGACTTCT
TTTATCAATTCAGTTGTTGTTCAATGAATGACTAAGTCTTTCCTGAAACT
TTCTTGGGAAGTAAGAGTATATACTGTCCATGGCTTTGTGGCATCCTTCC
TCCCGGAGGGTCATTGGGCTTCCTTACTTCAAGTTCACTGTTTCACACTT
TGATTCCATTTGGACTCACACAAGCTGTGCTTCTGATCCCCTTCCCATCT
GATATGTCTCAGGGTTAGGAAGTAGGCGCTTGCTGCTTCTCCTACCCGAT
CTGTGGGTCCTTCTCAGAATTTCAATGTTTCTATTCCCCCCGTATTGTTT
TCCATTCTCGGGACTCTTTCTTGTTTCTTAATTAAATGCAGTACAAGATA
TATAATCACGATGCTTCAAGGTAACAAATAACGCCCACCTCTCCCAGGAC
GATACCGGAG

TTTTCTTTTTTNNNCNNNNTTTTCCCTTTTTTTTTTTTTTTTTATATCCT
TTATCGATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAGGAAAGCCAGGACTACAT
AGTAAGACTGTCTTGAATATAACAAAAACCCAAAAACAAAACAAAACTGT
AAGATACTTGGAGCTGGGGCTGTATCTCAGCTCACAAGTTGCTGCCTAAT
ATACCCCAATCCCTGAGTTCCATTGTCAACACTGTACAAATCATCTGTGT
AGGCACATGTCTATATTTGCACTTATGAGTTGAAGGAAGTCCAAAAGTTC
AAGGTCACTCCCAACTATATAATAAGTTCTAGGCCAACTTTGGCTATGAG
ATTCCATCTTATTTTTTTCCACCACCAACCCCAACCGGGTGTGGTGGTGC
ATGCCTTTAATCCCAGCACTTGGGAGGAAGAGACAGGCAGATTTCTGAGT
TTGAGGCCAGCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAC
TGAGAAACCCTGTCTTTGAAAAAAATATATGTTTTATTATTATGAAGGAA
GAATTATTTCAACTTTGGGGGTGGGGGCCACATGGTAGCACATGGTTTTA
ATTTCAGAACTCATGAGGCATATATAGGAAAAATTTGAATGAGTTTGATG
GTCTACCCTAACAAGTTATGGGTCAGTCAGGGCTGTGTTAAGTATTAGAA
AAGATGTATTTATGTAAAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_o24.b1 MSMg01no088_o24.b1 CHROMAT_FILE:
MSMg01no088_o24.b1 PHD_FILE: MSMg01no088_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:34 2005
         (227 letters)



>mm_chr10_128129232_128129858
          Length = 627

 Score =  424 bits (219), Expect = e-123
 Identities = 225/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaccacacctgagaagcagttttttaaaaaggtcattatccctggccttgagaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaccacacctgagaagcagttttttaaaaaggtcattatccctggccttgagaaacaa 260

                                                                       
Query: 61  gtttagaaataaaggtcacagacagtctggtatccacaacccctaagagaaaggtacact 120
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagaaataaaggtcacagacagccaggtatccacaacccctaagagaaaggtacact 320

                                                                       
Query: 121 ctagccactccagaaacctgtactttcctctcctcaccgggtgacttcttttatcaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagccactccagaaacctgtactttcctctcctcaccgggtgacttcttttatcaattc 380

                                                          
Query: 181 agttgttgttcaatgaatgactaagtctttcctgaaactttcttggg 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgttgttcaatgaatgactaagtctttcctgaaactttcttggg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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