BAC Information

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BAC

Clone NameMSMg01-089E12
Chromosome10 (Build37)
Map Location 115,549,505 - 115,549,744
singlet/doubletsinglet
Overlap genePtprr, 4933416C03Rik
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E12.T7 (MSMg01no089_e12.b1)MSMg01-089E12.TJ (MSMg01no089_e12.g1)
ACCAG307821AG307822
length808758
length of high quality
(start - end)
231 (139 - 369)241 (130 - 370)
definitionCHROMAT_FILE: MSMg01no089_e12.b1 PHD_FILE: MSMg01no089_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:02 2005CHROMAT_FILE: MSMg01no089_e12.g1 PHD_FILE: MSMg01no089_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCNNCCCCCCCTCCCCCTCCNCTTCCTTTCCTTCCCTTCCC
AAGAAAANNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCTTCATTTTCTCTGAAAGACAGCTATCATCAT
CACAGAGGCAGCTTTAAGGTCTTTTTCTTATGCTTCAGCTATGTTGTAAT
ATTCAGATCCTGCTGGTAGGATGGCTGGGCTCTAGTGGAGACATACTGCA
CTGGCTGTTACTGATTGTGGTTTTGCACTGGTGTCTAGGCATCTGAGTAT
TGGTTGATCATAGGACTTGGTAGATGTTGCTTTCTTGTCTTTGTTGGTGG
GCGTTCCATTCCTCGGCTCCTGTTTCCTCTCTGTTTTGGAGTACGTGAGG
TCTGTGCAATGCCTATGGTGTTTTTTTTCCCCCCCTCCGTCCCCATGTGT
TTCTTGTTATATACTGGTATATGCAGCTTCCCCCACATATCATTAAATTC
CGCCATTGGCCGTTCTGCTCTATAACTCCGTTTCCGTGCTCTGGTCCGCT
CCCTCCTTCAACCTCACTTTCCTTTCATTCCTCACCCTCTTACTTTCCCT
ATTTATTTACTATTCCCCTTTTTTTTTTTCTTTCCCCTCTCCCTTCTCCT
TTCCCCCCTTCCCTTCTTTCCGTTCCCCCTTACCTCATCCTTTTTTCTTC
TTTCCCTTTCCATTTCACCACTCTTCTTACCATTTTCCTCCTATCCATAT
TTCCCTTTTTTTTACCCCTTCAACTACTCCCTTTTCCCTTCCATACATCC
TTCACCTG
TTTTTTTTTTCTNTCTGTTTGTCCTGCTTTGTGCTTGCGGGCCNTAANNN
NANCTACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCTGATTCATTCCAAGG
AGAGAAAACTCCAAGAGATCCAGGCCAAAGCACAGAGGCAGAAAGATCTC
CTCAGAAAATTGGAAAACCTGACCCTCAAGAGTCATTTCCAGTCTGTGCT
AGAACAGCTCAAGTTACAGGAGAAGCAGAAGCATGAACAGATCCTTTTTC
TACAGGAACAACTGAAGTGTTTTTTGAAGAAGTAAGACTTTGAATCCATC
ATCTAGACTGTAGACTTGGCGAATCTGTGTTTTCCTCTAGTTACCTTATC
TTGAATTGTTTTTGTTTTTTTGACCCCCCCCCTGCCCGCAGCGTTTCCCG
AATAAAGCGCAGAAAAGGCCCTCCAAAAAATGTGAAAACTTATAGGGTCC
CAATCGATCTTGGGCCTTGGCTTCTCTTGGTTACTCCGAGAACTCAGTGA
ACAGCTTCTCCGCTATGACCTTATCATACTACATAGCTGCACCTATCACT
GCTCTATAGTCTAGATTATATTGCACCACGACTAGTTTGTTTATGCTCTC
ACTGTCCATGTATTTGCCTCCCTCCCTTTAAAACCGCTTTTTTTTCCCCG
TGGGTTAGCTCCATCCTTCTAATTTTCATTTCCCGCCACCTTTTGCGCTT
AAGCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e12.g1 MSMg01no089_e12.g1 CHROMAT_FILE:
MSMg01no089_e12.g1 PHD_FILE: MSMg01no089_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:02 2005
         (241 letters)



>mm_chr10_115549305_115549945
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctgattcattccaaggagagaaaactccaagagatccaggccaaagcacagaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaagctgattcattccaaggagagaaaactccaagagatccaggccaaagcacagaggc 381

                                                                       
Query: 61  agaaagatctcctcagaaaattggaaaacctgaccctcaagagtcatttccagtctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaagatctcctcagaaaattggaaaacctgaccctcaagagtcatttccagtctgtgc 321

                                                                       
Query: 121 tagaacagctcaagttacaggagaagcagaagcatgaacagatcctttttctacaggaac 180
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 tagatcagctcaagttacaggagaagcagaagtatgaacagatcctttttctacaggaac 261

                                                                       
Query: 181 aactgaagtgttttttgaagaagtaagactttgaatccatcatctagactgtagacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aactgaagtgttttttgaagaagtaagactttgaatccatcatctagactgtagacttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)