BAC Information

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BAC

Clone NameMSMg01-089K06
Chromosome10 (Build37)
Map Location 41,775,995 - 41,776,241
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784
Downstream geneFoxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K06.T7 (MSMg01no089_k06.b1)MSMg01-089K06.TJ (MSMg01no089_k06.g1)
ACCAG308087AG308088
length791774
length of high quality
(start - end)
198 (130 - 327)247 (136 - 382)
definitionCHROMAT_FILE: MSMg01no089_k06.b1 PHD_FILE: MSMg01no089_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005CHROMAT_FILE: MSMg01no089_k06.g1 PHD_FILE: MSMg01no089_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCTCTCGCCCTTCCCCTCTCCCTTCCTCTTCTTCCCCCCTCCG
CCCCCNNACCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCATTTTGCCTTGGAGGCAGGGTCTCTCATCTAAGA
TCTGGGGCTCACCTATTAGGTGAGGCAGGCCGGTCTTTAAGGCCTAGGAA
TCCAGTCTCTGCTCCCAGCACTGTGGTTATAGACAGATGTTACCAATCCC
TGTCTTGTTACATAGTGCTGGGGCTCAAAGTCAAGACAAGCACTCTTACT
GATTCTCCTCAGTCTCAGACTGCCCCAGCGGAGTAGCGGAGCACTTCGCT
ATGAAAGGTTGGTCACTCTGGGTGTGGCTTATTTGAGCTTCAGATCCACC
TACTCCAGGGCTGGAGGCTTTTGTCCCTCCGCCCCCCCGAGTTCTATACA
TTGAAATCTCATCTGACTTTACCACCCCCTCTGGATAACTCCTTATACTG
CGTTCTTCCAGTCTTATCATGTGCATCCTCTACCTTGTGTTTCTCTCCCA
TGCTTGGTCATAGGCTTCCTTTATTCCTCTCACTTGTTCGTCCGCCCTTA
CTCCCTCCGCCTTGTACATTTCCTATCCCCCCCCCTTTCCTTTCCCCTCT
TTCCGTCTTTGCGTTTCACCTTCCTACGTCAAGCTGCGTCATTGCTTATT
CTTCTTCTGGCCTGCTAACCCGTTCTTCCAACACCCTTCTTCCTTATTTT
CCCCATGTTGCTCTTCCTTTTCCCACTTCCTGCATCCCCCC
TTGTTTTTGTTTTTGCGCTTTTGCGGCTCCTCTCTCCCTTTTCNNCCTCT
ACCNCNANCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGCGGTCCTAA
GCAAGGATGGTGGGAGGCATCTTTAGTCCCAACACTTGTATTAAAATTAC
AGTGGCAAAAACCACACAAAGAAAAAGAGTAGATAAATATGAATTATGTC
TTCTCATTCCTTAAAGATTGATTATTGCAGAATAAACAAGCAAATAGAGC
AACCCTTCTAAATCCACATCACCATCATGTGTCCCCTCCTCGCTGTGGCA
AGAATTCCTGTATGAATGGGTAGCTTGGCTCATCCTGAATGGAGCGGTTA
AAACAGTGGTGGGGGCTGATTTTTTTATCTCCCCCCCCCCGACTGGCACT
GAATAGAGGGCTTCCGTGTGTTTCCTCACACAGAGAACAATCTCATGGTG
GAAAGCTCCTTTCCATGTGCTCAAAATGTACTCACTAAAAATCTCCGTTT
ATATTTACTTCATGTGCATGAGTGTTTGCCGTGCTTGTGTCATTCGGCGT
GTGCGCGCCTCCCTTATTTCTCCTATTCCTTTCCACCCCCAACTTCATAT
TTTTTCTCATCCTTTCCAATTTTTTATCCTCCCATGCCTTTTTTACCCTT
TTTTTGCTTCCCTTTTATTATATTATCCCCTACTTACCTTTCTTTTCCCC
CACCCTTGTTACTTTATCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k06.g1 MSMg01no089_k06.g1 CHROMAT_FILE:
MSMg01no089_k06.g1 PHD_FILE: MSMg01no089_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:30 2005
         (247 letters)



>mm_chr10_41775795_41776441
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctgcggtcctaagcaaggatggtgggaggcatctttagtcccaacacttgtattaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgtctgcggtcctaagcaaggatggtgggaggcatctttagtcccaacacttatattaaa 260

                                                                       
Query: 61  attacagtggcaaaaaccacacaaagaaaaagagtagataaatatgaattatgtcttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacagtggcaaaaaccacacaaagaaaaagagtagataaatatgaattatgtcttctc 320

                                                                       
Query: 121 attccttaaagattgattattgcagaataaacaagcaaatagagcaacccttctaaatcc 180
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 321 attccttaaagattgattattgcagaataatcaaacaaatagagcaacccttctaaatcc 380

                                                                       
Query: 181 acatcaccatcatgtgtcccctcctcgctgtggcaagaattcctgtatgaatgggtagct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 acatcaccatcatgtgtcccctcctcgctgtggcaagaattcctgtatgaatggatagct 440

                  
Query: 241 tggctca 247
           |||||||
Sbjct: 441 tggctca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)