BAC Information

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BAC

Clone NameMSMg01-089L19
Chromosome10 (Build37)
Map Location 127,406,817 - 127,407,101
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
Downstream geneHsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L19.T7 (MSMg01no089_l19.b1)MSMg01-089L19.TJ (MSMg01no089_l19.g1)
ACCAG308156AG308157
length669675
length of high quality
(start - end)		254 (24 - 277)292 (56 - 347)
definitionCHROMAT_FILE: MSMg01no089_l19.b1 PHD_FILE: MSMg01no089_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:39 2005CHROMAT_FILE: MSMg01no089_l19.g1 PHD_FILE: MSMg01no089_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGATCCGCGGAATTCAGGGATGGGAGGTGGTATGAGACCAGCACTCTCT
ATGAGCTAAGATGGGTGACAAAGTGCACAATTTTCCTTGAAGAATGTTTG
TGGTCCTTCTGAGGAACTAAGACAGGCTAGGCTTGGGTTTTAGACACGTG
GACTCTCCCACATAGAAAACGGAAGTTCTCCTCTATGCTGGTATGAGACA
GGCATGGTGGGTGCTGAATGACCACCTGAATCATTCCTCATTCTGCATAG
ATCTGAAAAACCTAAACGAATTGGACCAGAATTGCAACAAGGACCTGTCT
GTGGTGACTGACTGCATGTTTTTTGCTCCGACCGCCTGCCACCCTCGCAC
AAGATACTCAGCTGGCTGGGATGCTAAGCTCTATCATCATCCCCTTGAGG
TGGGTGCCCACCTTTCTTGTGGATGCCCTTCTCTACTGGACTTCTCCAAA
ACCTGACAAAGCCCTGTGAAAGCTAGATCCTTTTGTGTTGTTGGGTCAAT
GGAAGTGCTGTGTGAGGGTGCAGAGCCTCAGGAGGAGGAAGATTCCTGTT
CTCAGACCTAATGTGTTGTGCCTAGGTGCCTGGTTTTTCCTTCCTCTGAA
TAAATGGGGTACATGGTATCACAGGATTCTGTAACGCTTAAACTGATCTT
ACCTATGTTGCTGAAAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAATGTTCCCTGACCGAAGGTCTTTCTGATAGGGCCTATGGAATCAA
AGTGTGGTGTAATTTCTTATCTTTCCCACACACACTTGCTGGGGATCCAT
TCCAGGTCCCAGGGCTTCATGTGAAACAAACTCTGCAGGAAACCTACACC
CCCCCGCCCCCCAGCTACATTCTCAGCTCATGAGACTCCTAAATTCTTAC
TCCCCATTTCTGTTCCTGACTCCTCTAAGACTGACTCTCATTCCCTACCC
TGCCTGCTTCAACTTTTTTTTTTTTTTACTTATAGTACATGCATGTGGTG
TGTGTGTGTGAGTGAGAGAGGGAGGGAGGTAGGTAGGTATCTTTCTCCCC
CTCTACCTCCTATCCCTCTTTATTTTCTCCCTCCCTTCTCGCCTTCTCTC
TACTTTTATTCTTCCTCTTTTTCTTATCTTCATTTCCACCAATTCACTTG
CATACTATACACTTCTCAAATTTTTCTCCTTCCTCCCTTATCTTCCCCCC
ACTATACCATTTCTTTTATTTCCCATACCATATCCTATCATTTACATAAC
CCATTATTGTATTCTCCTACACCCCCTCCCCCATTGCTCCTTCACTCCAT
CCTCTCCTGTTCTTCTTCTCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l19.g1 MSMg01no089_l19.g1 CHROMAT_FILE:
MSMg01no089_l19.g1 PHD_FILE: MSMg01no089_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:39 2005
         (292 letters)



>mm_chr10_127406617_127407301
          Length = 685

 Score =  514 bits (266), Expect = e-150
 Identities = 283/292 (96%), Gaps = 7/292 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttccctgaccgaaggtctttctgatagggcctatggaatcaaagtgtggtgtaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgttccctgaccgaaggtctttctgatagggcctatggaatcaaagtgtggtgtaattt 426

                                                                       
Query: 61  cttatctttcccacacacacttgctggggatccattccaggtcccagggcttcatgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttatctttcccacacacacttgctggggatccattccaggtcccagggcttcatgtgaa 366

                                                                       
Query: 121 acaaactctgcaggaaacctacacccccccgccccccagctacattctcagctcatgaga 180
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 365 acaaactctgcaggaaacctacacccc----ccccccagctacattctcagctcatgaga 310

                                                                       
Query: 181 ctcctaaattcttactccccatttctgttcctgactcctctaagactgactctcattccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 309 ctcctaaattcttactccccatttctgttcctgactcctctaagactgactctcactccc 250

                                                               
Query: 241 taccctgcctgcttcaacttttttttttttttacttatagtacatgcatgtg 292
           ||||||||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 249 taccctgcctgcttcaac---tttttttttttacatatagtacatgcatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 685
Length adjustment: 9
Effective length of query: 283
Effective length of database: 676
Effective search space:   191308
Effective search space used:   191308
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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