BAC Information

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BAC

Clone NameMSMg01-089O03
Chromosome10 (Build37)
Map Location 15,158,822 - 15,159,180
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089O03.T7 (MSMg01no089_o03.b1)MSMg01-089O03.TJ (MSMg01no089_o03.g1)
ACCAG308260AG308261
length698748
length of high quality
(start - end)
362 (37 - 398)410 (136 - 545)
definitionCHROMAT_FILE: MSMg01no089_o03.b1 PHD_FILE: MSMg01no089_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:51 2005CHROMAT_FILE: MSMg01no089_o03.g1 PHD_FILE: MSMg01no089_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
ATTTGACCTATCTGATGGGTTAAGGGAATAATTTGGGTCCTGACATGATG
TGCAGAACTTCTGTGGCATTATTCCATACAGTAAAAACAGCCAACTACTT
CCTGAATGAGGACTGAGGCACTTAAAACCATGAGCCAAAAAAAAAAAAAT
CTAAAAACAAACAAACAAACAAAACCAAAAACCCTGTCCTTGTTGTTTTT
GTCAAGCCTTTGCCATGGTGATGAGAAGAGCAAGTAGCGTACTACAGTAT
ATATGTTCTGAGATGAAGTTGATTGACACTAGTCACTTACAGTTAATATT
TAATGGAAAAGAAACCATTCCACTCAAAATAAACCTAACCTTCAAGTAGC
AGCAAGAAATTCATTTACTATCTAATTCCTAAAAATGTTACCAATCATAT
CCCAATATATAACCCAAATATAAGTGACATATAATACCCCATCCAGTCTA
CCTGCTAAGGAAGTGCAAAATTCAGACCCTTTCTAGATAGCATAAACACC
ATTACCCTTTGTTACACCCACCGCCCTATAATATCCACTGAATTCCCATT
ATCCCCTATGACCCCGATTACCTATGCGTCCCCCCAAATTGACTCCTTAT
GTATGTATGTCACACTCATACCACTCCTTTTATTTCCCCCCCACCCCC
TTTTNNNNNNNNNNNNNNNNNNCCTTTTTTTTTTTTTCTTNNCCCTCCCC
CTGTCCCTTTNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCAAGGAATAC
CGAATGGCTGAGAAGCACCTGAAAAATATGTTCCCCATCCTTAGTCATTA
GAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGAAGCTTGCAAGGATGTGG
AGAAAGAGGAACACTCCTACATTGTTGGTGGGATTGCAAGCTTGTACAAC
CACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTTCTA
CCTGAGGATCCCGCAATACCTCTCCTGGGCATATTTCCAGAAGATGTCCC
AACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACTGAAAATACGGTACATTTACACAATGGAGTACTACTCAGCTATTAA
AAAGCATGAATTTATGACATTTCTAGCAAATGCTTGTACCTGTATCTTAC
CATCCTGAGTGAGGCAACCTAACCCCAATAGAACTCTTATGATATGTTCT
CACTGATTAGTGGATATTATCCCAGAAACTTACCAACAGTGAGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_o03.b1 MSMg01no089_o03.b1 CHROMAT_FILE:
MSMg01no089_o03.b1 PHD_FILE: MSMg01no089_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:51 2005
         (362 letters)



>mm_chr10_15158421_15159183
          Length = 763

 Score =  605 bits (313), Expect = e-177
 Identities = 348/363 (95%), Gaps = 8/363 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcatatttgacctatctgatgggttaagggaataatttgggtcctgacatgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ggaattctcatatttgacctatctgatgggttaagggaataatttgggtcctgacatgat 701

                                                                       
Query: 64  gtgcagaacttctgtggcattattccatacagtaaaaacagccaactacttcctgaatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtgcagaacttctgtggcattattccatacagtaaaaacagccaactacttcctgaatga 641

                                                                       
Query: 124 ggactgaggcacttaaaaccatgagcc---aaaaaaaaaaaaatctaaaaacaaacaaac 180
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 640 ggactgaggcacttaaaaccatgagcccaaaaaaaaaaaaaaatctaaaaacaaacaaac 581

                                                                       
Query: 181 aaacaaaaccaaaaaccctgtccttgttgtttttgtcaagccttt-gccatggtgatgag 239
           |||    |||||||||| || ||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 580 aaa----accaaaaaccttgcccttgctgtttttgtcaagtcttttgccatggtgatgag 525

                                                                       
Query: 240 aagagcaagtagcgtactacagtatatatgttctgagatgaagttgattgacactagtca 299
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aagagcaagcagtgtactacagtatatatgttctgagatgaagttgattgacactagtca 465

                                                                       
Query: 300 cttacagttaatatttaatggaaaagaaaccattccactcaaaataaacctaaccttcaa 359
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 464 cttacagttaatatttaatggaaaagaaaccagtccactcaaaataaacctaaccttcaa 405

              
Query: 360 gta 362
           |||
Sbjct: 404 gta 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space:   266162
Effective search space used:   266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)