BAC Information

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BAC

Clone NameMSMg01-090D04
Chromosome10 (Build37)
Map Location 110,723,154 - 110,723,626
singlet/doubletsinglet
Overlap geneOsbpl8
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090D04.T7 (MSMg01no090_d04.b1)MSMg01-090D04.TJ (MSMg01no090_d04.g1)
ACCAG308492AG308493
length700689
length of high quality
(start - end)
477 (46 - 522)374 (77 - 450)
definitionCHROMAT_FILE: MSMg01no090_d04.b1 PHD_FILE: MSMg01no090_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:17 2005CHROMAT_FILE: MSMg01no090_d04.g1 PHD_FILE: MSMg01no090_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTAAATATTCGATAGTGAAGTTTTCATTAATGACAAAAAGACT
GATAACTCAGAGATTTTCTGGAATCCAACTCCTGACATTAAACAGTGGAG
ATTAATAAGGCACACTGTAAAGTTTGAAGAACAGGATGATTTCGAATCAG
AGAAGTAAGTACACCATTTTTAGCTAACTTCATGAAAATTAAGGAGTATT
TTGAGTTGCAGAACAGTGTAGTCACACTATATTCTGTCTTCTGTACTGTT
AACTCTGCAAGAGAGTTTGTCATTTGTGGGGTTGGAAGCATTCTGGGTTG
GTGTATGTGACACACGAAACTTCACAGATCACCTTGTCTCTCTGTAGCAC
AGAGCTAAAATGTCCTCCTTTTTCTCTTCTACTCCAGTGCTTTAATTTTT
GTTTGCATACAATTACAGGAGCTCTCAGTGGCTCTCAGCCTCCGCCTGGC
TTGTGCTTTCTAATCTGGCTTAAGCTGGAAAGTGAAGGAAGGGAAGAGTA
CAAAGCCTAAATTTTCTGTCCTCTGAAACAAGTACTGCCACTTTGACGTC
CTGGCTTTCTCAAGGGATTTAAATTAATTGGCACTTACCTAACATTATGT
TTTTACGTCCGGGAATTCCTTTCTAGAACTCTTCAGCCCTTGTATAACGT

NNCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATGT
TTTAGTGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTAGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATATGTTGGTGGTCTTTTGGTCTTGTTGACAGTGTCTTTTGCCTT
GCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGATTCTCAATCTTA
CAGCACAAGCCATTGCTGTTCTATTCAGGAACTTTTCCCCTGTACCCATA
TCTTCGAGGCTTTTCCTTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGCCTGGATGTTCTGAGTTAGGATCTTTTTGCATTTTGTATT
TTCTTTGATTGTTGTGCCGATGTTCTCTATGGAATCTTCTGCACCTGAGA
TTCTTGCTTCTATCCCTTGAATTCTGTTGTCGATGCTCGCATTTATGGCT
CCAGATTTTTTCCCCTAGTTTCCTATCTCCGGGGTTGTCTCACTTTGTGC
TTTCTTTATTGTGTCTACTTCTTTTTTTACGTCCAATTAGCTTTCGCCCA
TTTCCCTCCCCCGTTCTTTTCCCCTTTCCCCTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_d04.b1 MSMg01no090_d04.b1 CHROMAT_FILE:
MSMg01no090_d04.b1 PHD_FILE: MSMg01no090_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:17 2005
         (477 letters)



>mm_chr10_110722950_110723826
          Length = 877

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttaaatattcgatagtgaagttttcattaatgacaaaaagactgataactca 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttaaatataggatagtgaagttttcattaatgacaaaaagactgataactca 264

                                                                       
Query: 65  gagattttctggaatccaactcctgacattaaacagtggagattaataaggcacactgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagattttctggaatccaactcctgacattaaacagtggagattaataaggcacactgta 324

                                                                       
Query: 125 aagtttgaagaacaggatgatttcgaatcagagaagtaagtacaccatttttagctaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtttgaagaacaggatgatttcgaatcagagaagtaagtacaccatttttagctaact 384

                                                                       
Query: 185 tcatgaaaattaaggagtattttgagttgcagaacagtgtagtcacactatattctgtct 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tcatgaaaattaaggagtattttgagttgcaaaacagtgtagtcacactatattctgtct 444

                                                                       
Query: 245 tctgtactgttaactctgcaagagagtttgtcatttgtggggttggaagcattctgggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtactgttaactctgcaagagagtttgtcatttgtggggttggaagcattctgggtt 504

                                                                       
Query: 305 ggtgtatgtgacacacgaaacttcacagatcaccttgtctctctgtagcacagagctaaa 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 ggtgtatgtgacacacgaaacttcacagatcaccttatctctctgtagcacagagctaaa 564

                                                                       
Query: 365 atgtcctcctttttctcttctactccagtgctttaatttttgtttgcatacaattacagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtcctcctttttctcttctactccagtgctttaatttttgtttgcatacaattacagg 624

                                                                
Query: 425 agctctcagtggctctcagcctccgcctggcttgtgctttctaatctggctta 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctctcagtggctctcagcctccgcctggcttgtgctttctaatctggctta 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)