BAC Information

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BAC

Clone NameMSMg01-092H05
Chromosome10 (Build37)
Map Location 19,237,220 - 19,237,354
singlet/doubletsinglet
Overlap genenone
Upstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
Downstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092H05.T7 (MSMg01no092_h05.b1)MSMg01-092H05.TJ (MSMg01no092_h05.g1)
ACCAG310136AG310137
length716727
length of high quality
(start - end)
353 (43 - 395)141 (132 - 272)
definitionCHROMAT_FILE: MSMg01no092_h05.b1 PHD_FILE: MSMg01no092_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:19 2005CHROMAT_FILE: MSMg01no092_h05.g1 PHD_FILE: MSMg01no092_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAGAGGCTTCCCTATCAGGATCAAGAAGAATTTCCTACCAGACAATA
CACAGACTCCACACTCTCCTCACAAAAGAGAAGGGGACAAAAACCAAGGA
ACAAAATAGCCACCTTGAGGACAAGATACTGGCACCTCAAATTATAATTT
TCCAAAATTCAGATGCCTCAAAACTAGCCTAAAAACACTACCAATAACAG
CCAATATGTCTCCACTAAGCCCAGCAACCCTACCACAGTAGGCCCTGAGT
TTTGCAAAATATGTGATACCTAAGAAAAAAGACCTTAAAATAGCTGTTAC
AATTATGAGAGAAGTCCTTCAAGAGGACATGAATAAATCCCTTAACAATC
TATAAAACTTAAACAAACCTGTGAAAGAAAATAAAAGAGTTACAAGACCT
GAAAGAGAAAATAGAATCACTCCAGAATACCCACATGTAGGAAAATTTGA
GAATGAAAAATTTAGGAACTTGAGCAGAAGTTTCCGTGTCTAGCTTCCCC
ACAGGATTCTTGAAATGGAAGAGAGTATCTTAGGCTTGAATATAAATAGA
AAGAATTGGATCCCCCAGCCAAAGATAATGTTAATACTTAAAAAATCTGG
CTACCAATTTAACAAAATGGATTTATGACCTGAATCAACTTTATAATACC
TCAATTTGATTTATGT
AAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGCAGAAGTAAACGGGTCCAGCAAGCGTAT
CCTGCTGTATCTTGTCTACAAGAAGACAACATCACATTTTTTGTCTTTTA
AAATGAGTCAAAGATAAACTAGGTATAAAATGACCTAGGGACCACATGCA
GATAAGGAAAGGCCTAGACCATGGCATCTTGGGGCGACTTCATGGAAACG
CTATCCAAACAAATTGAAACGAAAAAGTTCAAAACTCTCAGGAGGGTTAA
CTATTCCTTTATCTACCTTCTAAAGATGCCTTTGCATCATCACATGGTAG
CTAGGTTATATTTTTCTACATCCTAACGATAGAGACGTTGCAGCAGTATA
CCATCCTGATTGACCACAATAAAAAAGAACGACATTCTGTTCATCCAATC
AACCCTTTTAAAAGAGCCCTCCTCTCACAGATAGTGGTACACAATCCCCA
ATAAGATTTGCTGAAGCACACACGCCCTCCCCTGCCTTGAACCCCACTGG
GTAACCCACCATTTCTCCCCCAAGAATTTTTAATCTGCAGCCTTTATCCT
TAAATTATAACACGAACTTCCCACCTTTCTCTTAATCCTTTGACTTGCCT
ATTGGCCCCCACCTTTTCTTTTTCTGACCTTCCATATTTGATTTAATATC
GGCGCTCATCTTTCTTACATTATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_h05.g1 MSMg01no092_h05.g1 CHROMAT_FILE:
MSMg01no092_h05.g1 PHD_FILE: MSMg01no092_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:19 2005
         (141 letters)



>mm_chr10_19237020_19237560
          Length = 541

 Score =  238 bits (123), Expect = 1e-67
 Identities = 132/135 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacattttttgtcttttaaaatgagtcaaagataaactaggtataaaatgacctaggga 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tcacatcttttgtcttttaaaatgagtcaaagataaactaggtataaaatgacctagaga 260

                                                                       
Query: 61  ccacatgcagataaggaaaggcctagaccatggcatcttggggcgacttcatggaaacgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccacatgcagataaggaaaggcctagaccatggcatcttggggcgacttcatggaaacac 320

                          
Query: 121 tatccaaacaaattg 135
           |||||||||||||||
Sbjct: 321 tatccaaacaaattg 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)