BAC Information

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BAC

Clone NameMSMg01-094F21
Chromosome10 (Build37)
Map Location 119,741,150 - 119,741,533
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik
Downstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F21.T7 (MSMg01no094_f21.b1)MSMg01-094F21.TJ (MSMg01no094_f21.g1)
ACCAG311558AG311559
length896676
length of high quality
(start - end)
---383 (57 - 439)
definitionCHROMAT_FILE: MSMg01no094_f21.b1 PHD_FILE: MSMg01no094_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:59 2005CHROMAT_FILE: MSMg01no094_f21.g1 PHD_FILE: MSMg01no094_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTNTTTTTTTTTTTTTTTCTTTTNNNNNNNNANNACCNNGGCT
GTGATGCGGCCTCGAACCTTGGGNCGNTTCAAGAGGANTATCCGGATCAG
AAAGAGCGGAATTCTCATTTCCCACCCACATAAAACGTCAAAGGTTACTG
ACTATATCCATGGATAAACATATTTCCCGCCAACAAAGGGAGGTTGTAAG
TCACTATTAACCATGATTCCTCGTGACAACTGTAGAACGCAAGGACTCGT
CTCATCTGTCTCGACTGTGTAGTGTGCAAAGAAAAGTGTGACGACGTGTT
AGCATACAACAATTCATGATTTTCACCCAATCCCTTATAATACGCTTGTA
TTAAGTAAAATTCTATCCCATTATGTCCCGTCACATACGGTCATTTTCTT
TTATATGAAGCAATTGAGATAACGACAAATACACAAAATTTTTTTTTTTT
TTTCCCCCCCCCCACCTCCGTAGTTTAGAAATAATTATTAAAATTATTAT
TAAACTTTCGTCCTCCCCCAAAAAAAAAAAAAATAAAAAATCGGGGTGGG
GGGGGGCGCTTTTTCTATCAATACAAATTTCACTTTCAATTCACACCTAC
CTTAAGTATAATTATTTCATACTTTCCCACACCACTTTTTTATTTAATTA
AATATTACGTCCTATTTCTACTAAATACCTATCAATAACACGAACAGCAA
ATATCAACCTTATTATTCCCACCTACCCCCTCTTATCCCCGTCTAAAATG
ATTGCGCCGTATTATATCTTACTGAAATAATTAGCCACGCCCACTAATTT
TTATACTCCTTTATTTCTCATGTACATATTTTATAGACGCAGCATGTGTC
GGTATTGTTATATCTTTAATATATGCCCCTTGTTCATTATAATAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACACACTCCTCCAGCAGTGCTCAGTCTTTTCCTGGGTGAGAATA
TGACTCTGGTGTTTGCGGCTCCTGTCTTCTGGTCGTGGGCTTCATGTTTT
CCCCTTTGTTCTGCAAAGCTCTCCACCTGACCTGTTGTTCGACAGACAGA
TCCCTCACAGCCTATCCCTGACAACTAAGACAGAACCCACGTGCTAGCCC
GATCCCCACGCATGTATGATTTGATAAGCTCTGTCTACATGGTAACACCC
CGTATACACACACTTCCTGAATGCATCCATAGTCTGTCGTCTTGAATCCC
TCCGACTCACGTTCTCCGCATCGGCAGCTGTCTCCTAGGTGTGAGCTAAG
CAATGCGATTTTGTTCGTAGCATTCCGTTGTGCTGGTGGGCATAGTTAAG
ATCTCTTTTCCTTCTTCATACCCTCAGTTCATTATGTCTCTTTGCTCTAC
TTTGTGTGTGTTGTATACATGTTCATGTATGTGCATGTGCGTGCATGTGT
CTATGAAATCCAGGGGCTGACGTCATGTGCTTTCCTCAATGACCCGCTAC
TTCTCTTTTGAGACAGGTTCTTCCATCCAAGTGTTAACCATGTCTGACTC
ATGCCTGCATCCGAGATCACCCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f21.g1 MSMg01no094_f21.g1 CHROMAT_FILE:
MSMg01no094_f21.g1 PHD_FILE: MSMg01no094_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:59 2005
         (383 letters)



>mm_chr10_119740950_119741733
          Length = 784

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%), Gaps = 1/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacactcctccagcagtgctcagtcttttcctgggtgagaatatg-actctggtgtttg 59
           |||||||||||||||||||||||||||||||||||| ||||| ||| | || ||||||||
Sbjct: 201 acacactcctccagcagtgctcagtcttttcctgggggagaacatgaaatccggtgtttg 260

                                                                       
Query: 60  cggctcctgtcttctggtcgtgggcttcatgttttcccctttgttctgcaaagctctcca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggctcctgtcttctggtcgtgggcttcatgttttcccctttgttctgcaaagctctcca 320

                                                                       
Query: 120 cctgacctgttgttcgacagacagatccctcacagcctatccctgacaactaagacagaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgacctgttgttcgacagacagatccctcacagcctatccctgacaactaagacagaa 380

                                                                       
Query: 180 cccacgtgctagcccgatccccacgcatgtatgatttgataagctctgtctacatggtaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacgtgctagcccgatccccacgcatgtatgatttgataagctctgtctacatggtaa 440

                                                                       
Query: 240 caccccgtatacacacacttcctgaatgcatccatagtctgtcgtcttgaatccctccga 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccccgtagacacacacttcctgaatgcatccatagtctgtcgtcttgaatccctccga 500

                                                                       
Query: 300 ctcacgttctccgcatcggcagctgtctcctaggtgtgagctaagcaatgcgattttgtt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcacgttctccgcatcggcagctgtctcctaggtgtgagctaagcaatgcgattttgtt 560

                                   
Query: 360 cgtagcattccgttgtgctggtgg 383
           ||||||||||||||||||||||||
Sbjct: 561 cgtagcattccgttgtgctggtgg 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 784
Length adjustment: 9
Effective length of query: 374
Effective length of database: 775
Effective search space:   289850
Effective search space used:   289850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)