BAC Information

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BAC

Clone NameMSMg01-094I18
Chromosome10 (Build37)
Map Location 84,886,361 - 84,886,500
singlet/doubletsinglet
Overlap geneBtbd11
Upstream geneNuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974
Downstream geneEG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I18.T7 (MSMg01no094_i18.b1)MSMg01-094I18.TJ (MSMg01no094_i18.g1)
ACCAG311689AG311690
length754716
length of high quality
(start - end)
74 (100 - 173)142 (90 - 231)
definitionCHROMAT_FILE: MSMg01no094_i18.b1 PHD_FILE: MSMg01no094_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:15 2005CHROMAT_FILE: MSMg01no094_i18.g1 PHD_FILE: MSMg01no094_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCCTCATCCATTTGCGTTTTTCTCTTTTTTTTTTTGGNNNGNAAGTGC
GCGNCGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CGCGGAATTCCATACTATTCCGACAGTTAAGTGTCTTCTCCCAGGACAGC
CTAGCATCCGTTCGACCGGAGGTACCCCCCTCTGGCTAAGCCGGTGCTCT
TATCCACACAAGGTCCCAAGGTAGCCATGAAGAAAGAAAGATAAAGACAT
TTAGGAGGATGGCACCCGCTAACTCTTTTTACAAGGAAGCTAGACTGCAT
TCCAGAGGTTCCTTCCCCTCGGCGATAACGCAGTTATGCTTCTCGACTCA
TGCCAGTTTTATCCCGCACAGGACCTGTCTTATATAAAGCTATTTCCAAA
ACCCCACGAGGATTTTTTATGTCTCCCCCCGCCCCGAGGTTCCCCTCCAG
TGTGTTAGGGGATAGGGACAGCCATTCTAAAACATACCCAACCACAGGGG
AGGTTCGTTTCCCAGGATAACGACAATCCCATCACCTGGTTATGTTCGAG
CCAAAAGCTGTTCTGTGATGCTCGTAAATTACTTTAGATTTACCTTTCCT
CCTGTAGGTTGACCCTTGTAATTTTCTCGTAGGACATCTTCCTCTTTCCT
TTTGCCGTGCAGTGTATGTTTTATTATATACTTCATTGGCCCCTCTGGCT
TCCTCTACATCTGCCCCCGCTTTTGCTAAATTGAGCTTCCCTCTCCCCTA
ACGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATTTTTATATAAAACAGAGTAAGTTAGGTGGGGTGTGTGTTAC
AGAGAACAAGAGCCAGGAATGAGGGTAATAAATGGAGGAAGATTTTTATT
TTAGTTGGGGTAGTAGGAGAGAGCATCACTGTAAGAGGGATACTGTAGAA
GGTCTCCAAAGAAGTCAGAGAGCTGTACACACAGCATGTAGAGCCTTCTG
GGCAGGAGGAGCAGTGTATGCCAGAGCCCTGAGGTACGAATGAGGGAGCC
CTCAGGCATATATGCAAGGTTCTCAAGCAGGGATGCCGCAGTCCTTAGGC
TGGCATGAAGGAGCCCTCTGGCATGGTATGCTGGAGTCCTCAGGCACGGC
ATGCAGGAGCCTTCTGGCACACACGTTTTGCCTCGTGACTGAACGACGCG
GCCGGCTGGTTTGTGTTGAGCGTGCCCACTATACATGTCCGCCCTGTATG
TTATCGCGTGTGGCCTCTTAAACTGTCCTATAATCGCCCCCCCCCCTACC
CACTATATTTCTTTGCGTGATGTTTCCCCTCTCCACCTCCTTTCCCCTTC
CCTCTTCCCCCCATATTTTCCGCCATTTTTCTCCCGCCGCTTGCCTTTGC
CCCCTTGTACTTCCTCTTTGCCTTCCCCTTGTTCCCTTCTCCCCCCCCCC
CCCCGTTTTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i18.g1 MSMg01no094_i18.g1 CHROMAT_FILE:
MSMg01no094_i18.g1 PHD_FILE: MSMg01no094_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:15 2005
         (142 letters)



>mm_chr10_84886159_84886700
          Length = 542

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtgtgttacagagaacaagagccaggaatgagggtaataaatggaggaagatttttattt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgtgttacagagaacaagagccaggaatgagggtaataaatggaggaagatttttattt 262

                                                                       
Query: 63  tagttggggtagtaggagagagcatcactgtaagagggatactgtagaaggtctccaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagttggggtagtaggagagagcatcactgtaagagggatactgtagaaggtctccaaag 322

                               
Query: 123 aagtcagagagctgtacaca 142
           |||||| |||||||||||||
Sbjct: 323 aagtcaaagagctgtacaca 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)