BAC Information

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BAC

Clone NameMSMg01-094N09
Chromosome10 (Build37)
Map Location 7,617,237 - 7,617,679
singlet/doubletsinglet
Overlap genenone
Upstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d
Downstream geneMap3k7ip2, LOC100039046, Ust, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N09.T7 (MSMg01no094_n09.b1)MSMg01-094N09.TJ (MSMg01no094_n09.g1)
ACCAG311898AG311899
length642708
length of high quality
(start - end)
291 (34 - 324)441 (73 - 513)
definitionCHROMAT_FILE: MSMg01no094_n09.b1 PHD_FILE: MSMg01no094_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:39 2005CHROMAT_FILE: MSMg01no094_n09.g1 PHD_FILE: MSMg01no094_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTGTGCAGGAACTCAAATCAGGAGCCTGAAGGGAG
AAACTGAAGCAGAACCCATGGGTGAATGGTGCTTACTGGCTTGTTACTCA
TGCCTTGCTCCACCTGCTTCCCTAATAACTCCAAAGCACCTATCCTAGGG
TGGCACCAACCAGAAGGGGTTGGGCTCGCCCACCTCAATCACCAATCGCA
AAAAAAACACCCTACAGAATTCACAGGCCAATCTGCTGGAGTATTTCCTC
ATATCTTAGAAGAAGCTAATTCTTCTCTTCCAGAAACTTACCAAAAGTAT
TTTGAACTCAAGGTTCTCTATCTAACCAGCATCACTTTTCTCTTGTAATA
TATAAAATTTCTTACTTATAATTCACCACCTAAGTTACTGTAATTATCAT
TCCATCTAACATATTTTTATATAATAATGTGCCTACTGCATAAGAGAAAA
AAATTCATGCTTCCATGAAATTGTTCATATATTGAAATATAACAGGTTCT
ATACACCAGCAACACTGGGATTAAATTTTAATTTTAAAATGTAAGAAATT
ACCTATTGATTATACTAAGCTAAAAATTATATGGTGAAAAAATATATAAA
TGAATTGTATAACTTCCCTATGTGCAAAAAATTATACCTCTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCGTTTTTAATAGCTCTCTACTGATCT
GAACCATCTGATCATGGTTGGGAACTTGCTGGGCAGCCTCCAGGCTATCA
TTTAGGGAGCGTAGCTGATGGTATTTTAGCTATAGGAAAATTGACCAATT
TTTGTGTTTTGGAAGGACTCTGGAAACAGAAGAGCCAAAGGTGAGGAACA
GCTTTATGAAGAGAATCCAAACTTTGAGAATGCCTGATGCCTGGCCCAGA
GCATCTCTCATATCCCACCCCTGGCAAAAACCAAGGCTGGCTGTGTAGGA
TTATGAGCCCAGTTGTGGTGAGAGTGTAATAAGCATCACCTGTCAATAAA
CAAGCCAATAGCCAACGAGCTGAGGCAGAAAATAGTAGGTGGGACACTGG
CAGGAACAGAGAGGACTCTGGGAAACAATGAGAGAATAAAAGGAGATGCA
TAGAGAGATGGAGATTGGAGCAAGATGCTGAGAGGGCTGGGAAGACTCGA
AGGAAGAGTTGCCCGAGAGTGAGGAGAGTCAAGCAACTAAGTGGTATACA
TAGTACTCTGTATGGACCCTTTCCGTCATTTGTTCTCCCCCGATGGCCTT
TGCTCTCCATTTCCCTTTATCTTTTTTCACCTTTCCCCTTTCCGCTTTTT
GCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n09.g1 MSMg01no094_n09.g1 CHROMAT_FILE:
MSMg01no094_n09.g1 PHD_FILE: MSMg01no094_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:39 2005
         (441 letters)



>mm_chr10_7617037_7617877
          Length = 841

 Score =  845 bits (437), Expect = 0.0
 Identities = 441/443 (99%), Gaps = 2/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgtttttaatagctctctactgatctgaaccatctgatcatggttgggaacttgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcgtttttaatagctctctactgatctgaaccatctgatcatggttgggaacttgctgg 260

                                                                       
Query: 61  gcagcctccaggctatcatttagggagcgtagctgatggtattttagctataggaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcctccaggctatcatttagggagcgtagctgatggtattttagctataggaaaatt 320

                                                                       
Query: 121 gaccaatttttgtgttttggaaggactctggaaacagaagagccaaaggtgaggaacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccaatttttgtgttttggaaggactctggaaacagaagagccaaaggtgaggaacagc 380

                                                                       
Query: 181 tttatgaagagaatccaaactttgagaatgcctgatgcctggcccagagcatctctcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatgaagagaatccaaactttgagaatgcctgatgcctggcccagagcatctctcata 440

                                                                       
Query: 241 tcccacccctggcaaaaaccaaggctggctgtgtaggattatgagcccagttgtggtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccacccctggcaaaaaccaaggctggctgtgtaggattatgagcccagttgtggtgag 500

                                                                       
Query: 301 agt--gtaataagcatcacctgtcaataaacaagccaatagccaacgagctgaggcagaa 358
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctgtaataagcatcacctgtcaataaacaagccaatagccaacgagctgaggcagaa 560

                                                                       
Query: 359 aatagtaggtgggacactggcaggaacagagaggactctgggaaacaatgagagaataaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagtaggtgggacactggcaggaacagagaggactctgggaaacaatgagagaataaa 620

                                  
Query: 419 aggagatgcatagagagatggag 441
           |||||||||||||||||||||||
Sbjct: 621 aggagatgcatagagagatggag 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)