BAC Information

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BAC

Clone NameMSMg01-095F07
Chromosome10 (Build37)
Map Location 89,231,844 - 89,232,219
singlet/doubletsinglet
Overlap geneE030041M21Rik
Upstream geneUtp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6
Downstream geneE530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F07.T7 (MSMg01no095_f07.b1)MSMg01-095F07.TJ (MSMg01no095_f07.g1)
ACCAG312270AG312271
length758722
length of high quality
(start - end)
173 (429 - 601)376 (72 - 447)
definitionCHROMAT_FILE: MSMg01no095_f07.b1 PHD_FILE: MSMg01no095_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:18 2005CHROMAT_FILE: MSMg01no095_f07.g1 PHD_FILE: MSMg01no095_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNTTTTTTNNTTNCNCCCCCCCCNCCCCCCCCCA
ACNNAAAAATCTTXXXXXXXXXXXXXXXXXXXXXXXXCTAAATCGNGAGG
CGGCGCGGAANNCCNGCTGTTGCTAAAAAAGAAGNNANNGCAGAAAGAAC
NACAAAGAANATGAGGGGGAAACAGACCCGCGNATNAAAANGANCCAAGN
CACAAACAGCCACAAANAANTCGCCAGAAAGNNGGGACTTGACTCAACGG
AGGGAAACTAANACGNTTATAAGTCAACAAGCAAGATGCTTCAGAGCCAT
GCCTACCAAAGTTATAGGGGGAAATGGGTCTGCAGAATAGGGGCTCAAAG
TGAATGAATGTACATGGAAAGTGAGATTTTTTTTTTTGCCCNAGGGNCNC
CCGCTTAGACAAATGGTTTATTGTACCTCCCTAACCCGAAGGCGTCACAC
GAGTAGCAGGGCTTTCATTTTGAGCAAGGGTTCTCAGCCGATGGGTCCTC
TTTGGGGTCGCATAGCAGATATCCTGCATATTAGATATTTACATTGTGAT
TCATAGCAGTAGCAAAAGTACAGTTATGAAGTAGCAATAAAAATAGTTTT
ATGGTGGGGGCAGGTCATTGACAACACAAGGAGCTGTATTAAAGGGTCAC
AGCGTTAGGAAGCTTGAGACCCATTGCTTTAGCAGGAGACATTGGTAAGA
AACATAGTAGGAATTTATTCTTTTTTCTTTTAAAAGGAAAGGATTGCGAC
CCAGAAAT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCTAAGGTGACTGCAAGTTCGTGACAA
AGACCAGAACTTTCTAGATGCTGCTGCAGGACACGCAGAACCTGATGTAA
AAACTGGCCTTTGAATGTCCTTGCAAATCTTGAAAATACTTCACTTTTAT
CTTGGTGCCTTTAGTCCGGAAGGGAGCTGAGATAGAATAGGTATATTTAG
GGCTAACCAACCTTGAATTACCAGTTTCTATGCAGACGCTTCTTAAATGA
TTAACTTGCCTGTGTGCAGATTTGAGCAGGAATCTCAGCTGAGATTTGGA
AGAGAGCAGATGCAAAATGAAAGCCCAGGGTTTTTCCTGTTTTTAGCTAT
CCATTGTGACATTTGCTGGGGTTGGGGGAGTTAGGGGAGTGGAAAGGNCC
CCCCCCCNNCCCCCCCCCCTCCCCCCCCCCCCCCCCTTCTCTTTTTCCCC
CCCCCCCCTCCCCCACCGCCGTTCTTCTTCTCTTTGTTTTTCTTCTCCCT
CTTCTCTCTATTTTTCTCTCCTTGGTCTTCTTTTCTCCTTCTCCTTCTCC
CCCTCCTTTTGCGATTGTCTTCTCTCTGTCTTCTAATCTTTCTCTCCAAC
TACTTCCATTATCTCCCATTATTCTCTCTCAACTCACCCTTCATCTCTTT
TTTACTTTTCTCTCTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f07.g1 MSMg01no095_f07.g1 CHROMAT_FILE:
MSMg01no095_f07.g1 PHD_FILE: MSMg01no095_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:19 2005
         (376 letters)



>mm_chr10_89231644_89232419
          Length = 776

 Score =  719 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctaaggtgactgcaagttcgtgacaaagaccagaactttctagatgctgctgcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctaaggtgactgcaagttcgtgacaaagaccagaactttctagatgctgctgcagga 260

                                                                       
Query: 61  cacgcagaacctgatgtaaaaactggcctttgaatgtccttgcaaatcttgaaaatactt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgcagaacctgatgtaaaaactgacctttgaatgtccttgcaaatcttgaaaatactt 320

                                                                       
Query: 121 cacttttatcttggtgcctttagtccggaagggagctgagatagaataggtatatttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttttatcttggtgcctttagtccggaagggagctgagatagaataggtatatttagg 380

                                                                       
Query: 181 gctaaccaaccttgaattaccagtttctatgcagacgcttcttaaatgattaacttgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaaccaaccttgaattaccagtttctatgcagacgcttcttaaatgattaacttgcct 440

                                                                       
Query: 241 gtgtgcagatttgagcaggaatctcagctgagatttggaagagagcagatgcaaaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgcagatttgagcaggaatctcagctgagatttggaagagagcagatgcaaaatgaa 500

                                                                       
Query: 301 agcccagggtttttcctgtttttagctatccattgtgacatttgctggggttgggggagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcccagggtttttcctgtttttagctatccattgtgacatttgctggggttgggggagt 560

                           
Query: 361 taggggagtggaaagg 376
           ||||||||||||||||
Sbjct: 561 taggggagtggaaagg 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)