BAC Information

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BAC

Clone NameMSMg01-095H01
Chromosome10 (Build37)
Map Location 71,293,619 - 71,293,908
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767
Downstream gene1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H01.T7 (MSMg01no095_h01.b1)MSMg01-095H01.TJ (MSMg01no095_h01.g1)
ACCAG312352AG312353
length684730
length of high quality
(start - end)
577 (32 - 608)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no095_h01.b1 PHD_FILE: MSMg01no095_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005CHROMAT_FILE: MSMg01no095_h01.g1 PHD_FILE: MSMg01no095_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACACTCCTATATCGAGAGGACCGCGGAATTCTTTGTTCGC
TCTGAGCCCCATTTTTTAATGGGTTATTTGATTTTCTGGAGCCACCTTCT
TGAGTTCTATATATATATATTGGATATTAGTCCCCTATCCGATTTGGGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATG
GTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATC
GATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTT
CCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGA
TTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGAC
CTTAGTACAGCAGTGTGCATTCTTAAATGCTGAGCTTTGGCTGGTCTGTA
ACCCCCAGACACATATGTAGCATAGGACTACCTTGTCTGACCTCAGTGGG
AGAAGATGGGCCTCATCCTGTAGAGACTTGATGCCCCAGGGAAGGGAGAT
ACCAGAGGGGTGGCTAGGGAGAGAGCACCCTTTCAGAGGTGAAGGGGTGA
AGAGGGGGGACCAGGAGAGAGGCAGCATTTGCGATGTAAATAAACAAAAT
AATTAATTATAAATTAGTGATTATTAATATAAAA
GAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGCCTCCCAGTCCTAGCAAGGGG
TGAGAAACTTTTCCAAGACCGATGTGACTCAGACCTTTCGGTCATAGAGA
CAGCAAGCTAACCTGTGACAGGAAAGATACGTGTCTTGTCTACTGCCTTC
CTGTGTAAGAGAAACCACAGCTAGGAGAGAACATGGAACAGTCCAGAGAA
TAGTGTAAGTTTTGTGCTTCTGAGAGTACTCTCAGTGTAAGGGGAAAATG
GAAGGAGAAGTTGGAACTCGATGCCTTCTGAGGTATGGGGTGTTATCTTT
GAGAGCCTAGCATCTTTTCCCCCCCCCCCCCCCCCTTCACTTCCTTTCTC
TCTTTCTTTCTTTTTCCCCCCCATCTAAACACTCCTCAGCTCGTCGGCGG
GGCCGCATTGCCTCTCGTCTTTCTCTTTTTCTCTTTTTACGTTTCTTATT
TTCTTTTTAGTTTTCCTTCCCAAACTTAATCTTTTCCTCTTTTCTCCCTA
TATTTTTCCCCACACTCTATTCATATCCACTTCTCCCCCTTTCTCTCCCC
CTTTCTATCTTCTCCCTCACCCCCTCTAATTCTATCAATCTTCCTTTTTT
TTCTCTTCCCCTTCCTCTGCACTCTTCCTCTTCTACTCCTTCGTTTTCCC
CGTTTCTTCTCTGTTTTTGGCTTGCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h01.g1 MSMg01no095_h01.g1 CHROMAT_FILE:
MSMg01no095_h01.g1 PHD_FILE: MSMg01no095_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:27 2005
         (290 letters)



>mm_chr10_71293419_71294108
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagcctcccagtcctagcaaggggtgagaaacttttccaagaccgatgtgactcagac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 490 ttcagcctcccagtcctagcaaggggtgagaaacttttccaagacccatgtgactcagac 431

                                                                       
Query: 61  ctttcggtcatagagacagcaagctaacctgtgacaggaaagatacgtgtcttgtctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttcggtcatagagacagcaagctaacctgtgacaggaaagatacgtgtcttgtctact 371

                                                                       
Query: 121 gccttcctgtgtaagagaaaccacagctaggagagaacatggaacagtccagagaatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gccttcctgtgtaagagaaaccacagctaggagagaacatggaacagtccagagaatagt 311

                                                                       
Query: 181 gtaagttttgtgcttctgagagtactctcagtgtaaggggaaaatggaaggagaagttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtaagttttgtgcttctgagagtactctcagtgtaaggggaaaatggaaggagaagttgg 251

                                                             
Query: 241 aactcgatgccttctgaggtatggggtgttatctttgagagcctagcatc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aactcgatgccttctgaggtatggggtgttatctttgagagcctagcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)