BAC Information

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BAC

Clone NameMSMg01-096I09
Chromosome10 (Build37)
Map Location 85,425,910 - 85,426,066
singlet/doubletsinglet
Overlap geneBpil2
Upstream geneRic8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e
Downstream geneFbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I09.T7 (MSMg01no096_i09.b1)MSMg01-096I09.TJ (MSMg01no096_i09.g1)
ACCAG313180AG313181
length725731
length of high quality
(start - end)
156 (69 - 224)271 (67 - 337)
definitionCHROMAT_FILE: MSMg01no096_i09.b1 PHD_FILE: MSMg01no096_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005CHROMAT_FILE: MSMg01no096_i09.g1 PHD_FILE: MSMg01no096_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTTCCGAGCTAGGCGGAATTCAG
CTGGATTTTCTCCATGACCAGAGCTTCCCTGGAGGACACGATGCTTTCTG
GAAAGCAGTGCCACCCCGTTCCTTCCTCCCAGTAGGGACGACACTTCTGG
TTCCTTCTACACTGGTGATAGCGAACAGAGAGCCAGGATAGTAGCGCATG
GAGTAGTTTAGGTACAGACCAGGTAAAACTGTGGAGAGCTAAGAGGCTCC
TCAGGTATTAGCCTTCCCTGTGTTTAACCAGGAGTCCCAGTCACAGGCCT
CCCTTTGCACTGTTTCTTATTTTGAACCTATCACATAACTAATACACCCC
CTTTATCTTCACCCCCGCCTACTATTTGGGTATTCTACGCAGTGTTGCTT
TCTGGAAAGATCCACTTATTACATGTAAATTATAGCTGATGAGGTATCTC
AGTGGTTATGAGCACATACTGCCTCTTGTTGGCAACATTTATCCAGCCTC
CTATCACCCACTGTCTGGTATTTCACAGTTGTCTCTATTTCCAGTTCCGG
GCCTTCTTGAACTCTCTTTCTGGACCTTATGGTTCCCCTCCCTCACTCTT
TCCTCCTTCTTTCTTGTTTATTTCCACGTATTTTTAACTTCAACTTTCTC
TTTTGACCTCTCTCTTGTCTTGTTCGGTTGCTATACTGCCTTTTTACAAT
CTTATACTTTACTTGGTTATCCCCT
TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCCTAAAGAATGCGTGGGAACCTGAAGGAGCT
AGCTTTGGTTTCATCTCTGTGACTATGTCATACGCACTCACTGTGGGCTA
TAGTTTTAGAACTGGGCTTGGAGAAACAGTGGTGGTGAAAAGAGACATCA
ACCCAGCCCCTGTGGAACTGCCAGTTCAGGGGCTGTAAGCTTAGGAAGCC
AGATGAACCAAGGTGAGTGCTCCAACCCCCAACCCTTCTAGATAAGTTTA
CAGGCAATTCTGAACTTCATCTGGAAAATGAAGACAGCAGTATACAAGTC
TGCATGTCATCTGAAGGACTAAACCCTGTGACATGGGCCTGCCAAGCCTA
GGTGGGAGCTACAGCACCCTCTTGGAACTCCCTTGTACCAGTTAGTCTTA
TGGTAGTGTGCCTGGCATTTGTTCCCCCAGGGGATCTTCATGGACAGTCC
GTGCCCTCTTTTCGACTGTCCCGCACTGTAAGTCTTATCTTCTCCATTGC
TTCAGAACATCACTCATGGAGATCTCCAGGTTGCCACCATCCTGTGGTTT
AGCTCATTCTCAGGTCACATGGATGTCTCCTCAACGTACTCTTCTCAGGA
TAGTTCCCGCTTCTCCTAATCTTACCTGTCTCTTCGTGTAATCTAGAATT
ATGCTCTAGGTCCTGATCCGAACCTACCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i09.b1 MSMg01no096_i09.b1 CHROMAT_FILE:
MSMg01no096_i09.b1 PHD_FILE: MSMg01no096_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (156 letters)



>mm_chr10_85425710_85426266
          Length = 557

 Score =  281 bits (145), Expect = 2e-80
 Identities = 154/157 (98%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagcttccctggagga-cacgatgctttctggaaagcagtgccaccccgttccttcct 59
           |||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 cagagcttccctggaggaacacgatgctttctggaaagcagtgccaccaggttccttcct 260

                                                                       
Query: 60  cccagtagggacgacacttctggttccttctacactggtgatagcgaacagagagccagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtagggacgacacttctggttccttctacactggtgatagcgaacagagagccagg 320

                                                
Query: 120 atagtagcgcatggagtagtttaggtacagaccaggt 156
           |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtagcgcatggagtagtttaggtacagaccaggt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 557
Length adjustment: 8
Effective length of query: 148
Effective length of database: 549
Effective search space:    81252
Effective search space used:    81252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)