BAC Information

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BAC

Clone NameMSMg01-097J23
Chromosome10 (Build37)
Map Location 23,675,161 - 23,675,443
singlet/doubletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3
Downstream geneTaar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097J23.T7 (MSMg01no097_j23.b1)MSMg01-097J23.TJ (MSMg01no097_j23.g1)
ACCAG314006AG314007
length737941
length of high quality
(start - end)
283 (126 - 408)---
definitionCHROMAT_FILE: MSMg01no097_j23.b1 PHD_FILE: MSMg01no097_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:26 2005CHROMAT_FILE: MSMg01no097_j23.g1 PHD_FILE: MSMg01no097_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGGAAAGGGTAACGGGGGTTATGGGGTAGTCAACGAACCCCCAGGGATC
TGGGCCACTATAATTGCGGCGCTAAACGACTCCTATTTCAAAAGAGCGCG
GAATTCATTCTCCTCGAAAACTTTCATAAATAAAGATAACACAGTTGGGG
ATGTTGAGATTTGATTTTATGCTCACCCAGAATGACGGAATTCATTTCTC
CAAACTTTCCAGGTTGAGAACACACAAATGTATACTGTGTATTTGGTTGC
TTCAATGTTCCGTGTTTGTAAGAGAGATGAATGTGTATGTGAGTGTGTGT
GGATGCAGGCTAGTGCCACTGTATCCTGTGTGCAGGTCAGAGGCCAATCT
TAGGTGTTCACCCTCACTTTTTCACTTGTTTAAGACAGGTCTCTTGGTTG
GCTGACCCTTGAGCTCTTGGAGATCCTCCTGCCTCTGGCTCCCACTTCCT
GCAAGACCACTGAGCTCCCTCATGTGGCCATTACTCTGGTTCTGGGTATC
CAAACGCAGATTACCTGGCTTGCGTGTCGAGTGCATTTACACACAGCCAT
CCCTGACCCTAGGGTTATTAATTTGGACACTTTTCAATAGCGTGCACCCC
TGATAACATAAAGGAAAGGTAACGCGTTAATATAAGGTAAGTTTATGGAA
GCGGTTTAATGTCTATTAGAGGTACTGAATGGGAAAACCGAGGCCAAAAA
AATATTACCCTGTAGGTTAAGCCATCTCATTCCTGGG
CGCCCCCCAAAAACCCAAAACTTTCCCATTACTCCCCGGCCCCCCTTCCC
CACCCCCCTGCCGATGATACGCAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCAATTCCCGGCAGCCAGGG
ACCCTAAAGTGGAGACTTTGTCCTCCAAAGAGGGTTGGCCCAAGCGTGAG
AAGGGCGTATAGTCTGCCGTTCCACGCAAATTCCGTCTGTAATTTCGCTA
AGAACTCCTGGAACGCAATGTCTGCCACCAAGGTAAGGACTTTTGCATGA
ACGTCCCCCAGCGTTCCCCTCCAACACTTTAGCTCTTCTCCCTGGCCGTG
CAGCGAACCGGCCAGCCTGTGACTATACTAGCGCTAGACTTGGCAGTATG
GGACTCCCATGCCACACTTATATCGGTATTTACCCACACGCTCCATTCGC
CCCCCACAATGTTTACTTCTTGCGCCCTCTCCCGCCAAAAGTTCCTACCG
GCCCGCCCGCCCAATCTGCCTAATTTGCGCTCAAAGCCCTCCCACACCCT
GGCCTGTGATACCACTTGCCAGCCCACTCTCCCCCTTTGAGGCAGCCTCG
CCGCGCATCACGCCCCTTCCCCGTGCACCGCACAAGATCCACCCCCCTAC
CCCCCATATACACCTTCAGACACCCACCTTCACTTGGTGCCGCTCCAGGT
ATCAACCATTCGCCCCTACTCCTCTCGCATATACTTCCCCCCGATGGCGG
TGAGCACGACCCGCCTCCAGGGCACCCCCACCCCGTTTGCCACTCCTTCA
AACATGCAGCCCACCCCTTCCCCACCCCAACAATGGGCGCGCTTTCCCGG
CTCCTCCCGGTCCCCTATCTGTCACCTCCGCTATTCGGTTTCACGCCCTC
CAACCCCCCCCCATTGTCACCGCCTCACCACCGCCCATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_j23.b1 MSMg01no097_j23.b1 CHROMAT_FILE:
MSMg01no097_j23.b1 PHD_FILE: MSMg01no097_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:26 2005
         (283 letters)



>mm_chr10_23674961_23675643
          Length = 683

 Score =  449 bits (232), Expect = e-130
 Identities = 271/284 (95%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaataaagataacacagttggggatgttgagatttgattttatgctcacccagaatga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 ataaataaagataacacagttggagatgttgagatttgattttatgctcacccagaatga 424

                                                                       
Query: 61  cgga-attcatttctccaaactttccaggttgagaacacacaaatgtatactgtgtattt 119
           | || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 423 c-gagactcatttctccaaactttccagattgagaacacacaaatgtatactgtgtattt 365

                                                                       
Query: 120 ggttgcttcaatgttccgtgtttgtaagagagatgaatgtgtatgtgagtgtgtgtggat 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggttgctttaatgttccgtgtttgtaagagagatgaatgtgtatgtgagtgtgtgtggat 305

                                                                       
Query: 180 gcaggctagtgccactgtatcctgtgtgcaggtcagaggccaatcttaggtgttcaccct 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct: 304 gcaggctagtgccactgtatcctgtgtgcaggtcagaggacaatcttaggtgtccacctt 245

                                                       
Query: 240 cactttttcacttgtttaagacaggtctcttggttggctgaccc 283
           | | ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 244 cgccttcccacttgtttaagacaggtctcttggttggctgaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)