BAC Information

Click to search

BAC

Clone NameMSMg01-097K10
Chromosome10 (Build37)
Map Location 119,088,796 - 119,089,146
singlet/doubletsinglet
Overlap geneGrip1
Upstream geneLOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
Downstream geneHelb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097K10.T7 (MSMg01no097_k10.b1)MSMg01-097K10.TJ (MSMg01no097_k10.g1)
ACCAG314028AG314029
length1,252694
length of high quality
(start - end)
---351 (55 - 405)
definitionCHROMAT_FILE: MSMg01no097_k10.b1 PHD_FILE: MSMg01no097_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:28 2005CHROMAT_FILE: MSMg01no097_k10.g1 PHD_FILE: MSMg01no097_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCCCCCNNNNCCCNNNNCCNNCCCCCCTCNNNCNNNNTNCT
TCCNCCCTNNNCCTCGGNTCCCCNTTCTTTTCTCCCCTCCCTGCTCCTTT
TTTTTTGCCGCCTACTGTACGCCGCCAGTATATACTCGTCGCTCGTGACC
CGGTATTAGCGTCGTCGTGTTCGGTTGCGGCGTTCAGCGCGACGAGAATG
AGGGGATATATGGGTGCGGGCGAGGTGGTTTTATATTTATTGTATACCCC
TCGCCTGGCCTTCCCCTCTCTTCTTTTCAAAATAATACACAACGTACCCG
ACGCGAATATTTTTATTTGTTCGTGTATATTTGATGGGCAGACAGCGCTG
TTACGCCTTACCGGNCGGCTGTGCTCGTTTATTGATCCGCACGCATGGGA
GCGTGTTATCGTTGTGTTGTTGGGGAGTCTTATGGCCGGCGTTACGCCCG
CGTGAGATAGGTCTTTTACGCCCCCGCTAGATTCGTATCCGTACGCGTCG
CGTTCCGTCTCCTGTAGATTATCCGTTTGTGTGCCGCGTGCGCGGCTGTG
TTAGAACAAGGAATAATGAGCGAGGAATGAGGCGTTTAGTTGGCGCGAGG
GGCGCGNGCGGAGTCATTTGCAGGAGGCCGCGTAACACCGTTTTGGTGGA
TTGCGTCTTGCGCAGGCGTAACGCAGCGCGCGTCGGCTACGAGAAGAGGT
TGTCAGAAATCGTGCAGTAGTTAATGTGTTTACGCGTGTTACACGCCGCA
CTCTATGCGGGAGTGCGCCCTGATGGGTTGTGCCGATTAGTAGGATACGG
GGGTGGGCGGGGGTTAGGGGTTGGCGTGTTGGAATACGCCGACCGCCGTC
GGGGCACATTGCGAGCGGTGTGATCATAAGATACGCGCTAAGGTGGCGGA
GTCGGCGAATATAATAAATATATAGAGGGGCGCGGGCGCGGCGGTCGGGG
CGTATATATGGTGTGCCGCCGGTTCGTGTGTTGTACGGGTGGTTGTCGCG
CCCCACAACCATCGCTCTGTGTGTCATGTTGTGGGTGCGCCCGCCGGCGT
ATAATTCCGACACGGTTGTGCGATCGAATTGTAGTTTTTAACAACGCGAT
CGTGGTGTGTGTGGGTATCGCTCGGGCGTCGTTTGTTATTACGGGCGTTT
CAGAGTACGCGGGTGGCTCGGACGGTGCATAGCGAGCGGAGTGTATGAAT
GTACGGTGTGTGTGGATATATAACAACACGCGAGGGTGGCCGCGCGCACG
CC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATCTTTTCATGGATGCACTGTTACAGCTATCAAGGCAGAGCATGG
GATCTTTAAAATTGAGTTGACATTTACAAAAACACACAACTTCTGGCAGC
TTTAATTATTACTTAAAAGAAGAGCTTTAAAACTCATCCCATCCGCTACC
TGAGCTTTGATTACGTTAAAGAGGAGAAAAAGAACCCTGATAAATTTAAG
AAGTGAAGTTCAGACAAGGAGCCTGCCCTGCCAGGCTCTCTGATTCGTTT
TCAGGATAACTTTTACATTCATTCCAGGAACAAAGCCAAATATCAGATGT
GTCCCTCGCTTCTGACAGTTAATGACAAAGGGAAAAAAGAATCTTGCCCA
ACATGCAAAAGATTGAAAAGATATTTACAGACCTCTGAGCATCTTCATAA
TCACCAACCTCTACTGCAGAGAGGTTTATCCCTAGCCATGGAGAGATTTA
AAACGTCCTTTTCCTGTCAGTCCTATATAGGAGGCCCTGTGCCTGCTTGG
GAATTCTCCTGAGTCACACTCTCCCCCCTTTGCCCCCTTTCCTGGACTAC
TCCCCTCTCTCACCCTGACTTTCCTCCCCCCCCTTGTCTACTCTCTCTCT
CCATCGTCTTTGTTTCTTCCTTGCCTTTTTGCCCCCTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_k10.g1 MSMg01no097_k10.g1 CHROMAT_FILE:
MSMg01no097_k10.g1 PHD_FILE: MSMg01no097_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:28 2005
         (351 letters)



>mm_chr10_119088596_119089346
          Length = 751

 Score =  634 bits (328), Expect = 0.0
 Identities = 346/352 (98%), Gaps = 2/352 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcttttcatggatgcactgttacagctatcaaggcagagcatgggatctttaaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcttttcatggatgcactgttacagctatcaaggcagagcatgggatctttaaaattg 260

                                                                       
Query: 61  agttgacatttacaaaaacacacaacttctggcagctttaattattacttaaaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgacatttacaaaaacacacaacttctggcagctttaattattacttaaaagaagag 320

                                                                       
Query: 121 ctttaaaactcatcccatccgctacctgagctttgattacgttaaagaggagaaaaagaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ctttaaaactcatcccatccgctacctgagctctgattacgttaaagaggagaaaaagaa 380

                                                                       
Query: 181 ccctgataaatttaagaagtgaagttcagacaaggagcctgccctgccaggctctctgat 240
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 381 ccctgataaatttaagaagtgaagctcagacaaggagtctgccctgccaggctctctgat 440

                                                                       
Query: 241 tcgttttcaggataacttttacattcattccaggaacaaagccaaatatcag-atgtgtc 299
           || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 441 tcattttcaggataacttttacattcattccaggaacaaagccaaatat-aggatgtgtc 499

                                                               
Query: 300 cctcgcttctgacagttaatgacaaagggaaaaaagaatcttgcccaacatg 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctcgcttctgacagttaatgacaaagggaaaaaagaatcttgcccaacatg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)