BAC Information

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BAC

Clone NameMSMg01-097P03
Chromosome10 (Build37)
Map Location 62,333,242 - 62,333,492
singlet/doubletsinglet
Overlap geneCxxc6
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
Downstream geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P03.T7 (MSMg01no097_p03.b1)MSMg01-097P03.TJ (MSMg01no097_p03.g1)
ACCAG314250AG314251
length656666
length of high quality
(start - end)
240 (100 - 339)---
definitionCHROMAT_FILE: MSMg01no097_p03.b1 PHD_FILE: MSMg01no097_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005CHROMAT_FILE: MSMg01no097_p03.g1 PHD_FILE: MSMg01no097_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCAGATCCGAGAGAGATGGGCGGAATTCTGATGTTTACAACCAGCTAT
GGTCTGTCTGTCTGTCTCTTTCGTCCTCTGATCTCTATAATAGGGCTATC
ATGCTCAGAACATAAATACTATGACCTACCTCTCTCTAACACACACACAA
GACTTGTTGATAAGACAGTAAGAACCTGCTATGGTCTGTCTGTCTGTCAG
TCATCTTCTAACTTCCACAATAGGGCTGTGATGCTCAGAACATACTAGGA
CCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTTCTCT
CTCTCTCTTAGTTTTTCGAGACAGAGTTTCTCTGTATAGCCCTGGCCGTC
CTGGAACTCACTCTGTATATCAGACTGGCCTCGAACTCAGAAATCTGCCT
GCCTGCCTCTGGTTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTG
CCCGACAGGACCTCTCTTATATTCATTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCCTCTATCCATCTCTCTCTGACACGCTTTTCACT
CAACCACTTGTTGATAAGACAATACTGTGCTTTCTCTTAATTTTCTCTCT
CCCCAGTCCGTGTTTCCCCCCCACATATACCCCCCATATTAATACCTTGC
CCCCCC
GCTTCCACACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCT
GGAGGTGGCTCTGGAATGGGAGAGTCTGGAATAGTTAGGTTATGGTAGAG
ATGGAATGGGTATGCATAGTTTTGTATTTGTGAGGGGTAGCACCTCACTG
TAACACAGGATGCCCCAAAACTCACAATTCTCCTTGATGCTGCAGCATAT
CCTTCCACACCTAGGTTTGTAAATTGCGTAAAATGACCAAGTGTTGCCCA
CTCCACAAGGATAGTCATCCTCTGAGGCTTCTTTTCTGTGTGTTTATAAT
CGAGGAGCTATACGCCCCTGCTGACAGAATGTTCATGGGTAACAGCTACT
GTGAACGCTATGCTGCTCCTGATGGCTAGTGAGGCTATGCCAAATACCTG
CCTCCGTATAGCGCCAGTATCCTCCTTTCAAAGACCTGCATGCCACCTGA
CGGACGGCTCTTACTGCCATCTCATTGTCCTGACCTTGCATCCCCCCTAT
CTCACTATGTTCCCGCCGCAACGACTTTCTTTCCACCATCTGCCCCCTCC
CCACACCCTTTCGCTTTTGACACTTTACACCTCCTTCGCTCTTTTACACT
TCCCCAACGATCCCTGTCCTTCTCTCCCCCCTTTACTTTACCCCCAACTC
TTTTTTTTTTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p03.b1 MSMg01no097_p03.b1 CHROMAT_FILE:
MSMg01no097_p03.b1 PHD_FILE: MSMg01no097_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:52 2005
         (240 letters)



>mm_chr10_62333042_62333682
          Length = 641

 Score =  404 bits (209), Expect = e-117
 Identities = 236/251 (94%), Gaps = 11/251 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctcagaacata-aatactatgacctacctctctctaacacacacacaagacttgtt 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctcagaacatacaatactatgacctacctctctctaacacacacacaagacttgtt 260

                                                                       
Query: 60  gataagacagtaagaacctgctatggtctgtctgtctgtcagtcatcttctaacttccac 119
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gataagacagtaaaaacctgctatggtctgtctgtctgtctgtcatcttctaacttccac 320

                                                                       
Query: 120 aatagggctgtgatgctcagaacatactaggacctctctctctctctctctctctctttc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaaagggctgtgatgctcagaacatactaggacctctctctctctctctctctctctctc 380

                                                                       
Query: 180 tctctctctctctctct----------tctctctctctcttagtttttcgagacagagtt 229
           |||||||||||||||||          |||||||||||||||||||||||||||||||||
Sbjct: 381 tctctctctctctctctctctctcccctctctctctctcttagtttttcgagacagagtt 440

                      
Query: 230 tctctgtatag 240
           |||||||||||
Sbjct: 441 tctctgtatag 451



 Score = 58.7 bits (30), Expect = 3e-13
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 70  taagaacctgctatggtctgtctgtctgtc 99
           ||||||||||||||||||||||||||||||
Sbjct: 138 taagaacctgctatggtctgtctgtctgtc 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)