BAC Information

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BAC

Clone NameMSMg01-098J10
Chromosome10 (Build37)
Map Location 112,578,562 - 112,578,892
singlet/doubletsinglet
Overlap genenone
Upstream geneGlipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098J10.T7 (MSMg01no098_j10.b1)MSMg01-098J10.TJ (MSMg01no098_j10.g1)
ACCAG314729AG314730
length683691
length of high quality
(start - end)
527 (19 - 545)519 (56 - 574)
definitionCHROMAT_FILE: MSMg01no098_j10.b1 PHD_FILE: MSMg01no098_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:45 2005CHROMAT_FILE: MSMg01no098_j10.g1 PHD_FILE: MSMg01no098_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCCTATCAAGAGAGGATCCGCGGAATTCTGTTCTCGCCCTGCATGAC
CACAGGTCACTTTTCCTTACTGGGAAGTGTGGCACTGGCTTAGATTCCAG
GCCAGGAATTTGGCAGGGAGCAGGGAGGCTCCTACCATCTCAGATTTGCA
CCCACTGAGTTTCTGGGGTCTCAACCTGCTCTACAAACCAAGCTTCCTGG
CATGGTTTACTGTCCCACAGTAAACTGATTCACTTTGGATATATGCAGTG
TGAATTTCATCATAGCATCATTGGTGGTTTCCAAGGCAACCGTTTGAAAG
AGATCCAAGAGTAGAAGCTGTGTAACTTTCTTATGACTGCCTTGGGAGTT
GAGGCTTGTTACTTCTGCCACATTATTAACTGTATTATCCAGGATTTATT
AAAAAAAAAAAAAACAGAACTAGAACATGGCATATATTGGGGCATATTTT
GAGGATGTGTTAGTTGTTTGAAAACCATAAATTTTGCCAAAGGAAAGTTT
AGATGGAAGTATGGCTGCTTGCTCACGGGCAGTGTTTCCTCAGAGGTGCA
TCAGCTCGACTTTTCCCAAATGACTGAATCAGTTCTATCTATTTTGCTTA
GTTTAGTTCTGTTTTGTTTCCTCCAAACATATTCATTAGGTGAAGTCAAC
TGTCTGCAAGGATTCCGCACCTTTGTAAAATCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAAGACAGCCAGGGATATACAGAGAAACCCTGTCTCGAAAAACCA
AAAATGAAAAAAAAAAAAAAGTTTAAAGTAACACTAAAATTTATTTCAAT
TTAGTATAAAATAAACTACTTTATCACATGCAACAGGTAAGGTAATTCAC
AGGTTGTCCTGGCTGGTTTTGTGTTGACTTGACACAAGCTAGAGTCATCA
GAGTGGAAGGAGCCTCAGTTGAGGAAATTCCTCCATGAGGTCCAGCTGTA
TGGCATTTTCTCAATTAGAGATCAGTGGAGAAAGGCTCAGCCCATCCTGT
GGAATGACAGTCCTAGGTTTTATAAGATAGCAAGCTGAGCAAAGCCATGG
GAAGGAAGCCAGTAAGCAGCATCTCTCCATGGCTTCCGCTTCAGTTCCTA
CCTCCAGGTGCCTGCTCTGCTTTGAGTTTCTGTTTTGTCTCTCTTCGATA
AGGAACAGCAATGTGGAACTGTAAGCTGATGTAATCTGTTTCTCCCCAAC
ATGCTTTTCTCTTGTGATGTTTCATCACACCAGTAACAACCCTAAGATAA
GACACAGGCCAGCTCTTTATGAAACTCTAACTGAAATCCCAATCTTTTTG
TAGAGGTAGAACCTAACTACCGACAGATTTAAACTGGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_j10.b1 MSMg01no098_j10.b1 CHROMAT_FILE:
MSMg01no098_j10.b1 PHD_FILE: MSMg01no098_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:45 2005
         (527 letters)



>mm_chr10_112577966_112578892
          Length = 927

 Score =  615 bits (318), Expect = e-180
 Identities = 329/334 (98%), Gaps = 3/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 194 gtcccacagtaaactgattcactttggatatatgcagtgtgaatttcatcatagcatcat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gtcccacagtaaactgattcactttggatatatgcagtgtgaatttcatcatagcatcat 868

                                                                       
Query: 254 tggtggtttccaaggcaaccgtttgaaagagatccaagagtagaagctgtgtaactttct 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tggtggtttccaaggcaaccgtttgaaagagatccaagagtagaagctgtgtaactttct 808

                                                                       
Query: 314 tatgactgccttgggagttgaggcttgttacttctgccacattattaactgtattatcca 373
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 807 tatgactgccttgggagttgaggtttgttacttctgccacattattaactgtattatcca 748

                                                                       
Query: 374 ggatttattaaaaaaaaaaaaaacagaactagaacatggcatatattggggcatattttg 433
           |||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 747 ggatttatt---aaaaaaaaaaacagaactagaacatggcatatattggggcgtattttg 691

                                                                       
Query: 434 aggatgtgttagttgtttgaaaaccataaattttgccaaaggaaagtttagatggaagta 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aggatgtgttagttgtttgaaaaccataaattttgccaaaggaaagtttagatggaagta 631

                                             
Query: 494 tggctgcttgctcacgggcagtgtttcctcagag 527
           ||||||||||||||||||||||||||||||||||
Sbjct: 630 tggctgcttgctcacgggcagtgtttcctcagag 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)