BAC Information

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BAC

Clone NameMSMg01-099E14
Chromosome10 (Build37)
Map Location 29,133,728 - 29,236,098
singlet/doubletdoublet
Overlap geneRspo3
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneEG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099E14.T7 (MSMg01no099_e14.b1)MSMg01-099E14.TJ (MSMg01no099_e14.g1)
ACCAG315258AG315259
length742760
length of high quality
(start - end)
248 (46 - 293)218 (77 - 294)
definitionCHROMAT_FILE: MSMg01no099_e14.b1 PHD_FILE: MSMg01no099_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:41 2005CHROMAT_FILE: MSMg01no099_e14.g1 PHD_FILE: MSMg01no099_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,133,728 - 29,133,970)(29,235,881 - 29,236,098)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGCAGTACCCATATCCAAACCAGCTAAGGGGATGTCAGGATT
CTTTATGGGAAAAAGTCTACTTTTGATTATATTATTTTAATATATACACT
CCACCAGATATATGAATAGATTTAGTTGTGGTTAGGTGTGTATGTTTGTA
AATCTATGAGTGCCATAAGAGATTTTTATGCAAAGATATGGCTAACTAGA
ATAGAGTATCTTAATTTTAGTCTTTCCAGGTACACATTTTCACACATCAT
AAAATACATATTTACTGGAAATACAAACTTACATGGTAATACTTTATTAC
CCTGGAGTTGTCTCTCCACACTTCCATGGTGATCTCCAGTGCATTTAGCA
AGCCTTGATCATCCAATTTTTTTTTTTTTTTTTAGATTGGGGTACCGGAC
CTGATTAGTCTATAACCAAAGTTAAGCTGGAGTCCCTATCCGGTTTCTAT
TTGATTTTTGTCTTTGCCCTTTTGGCTTTTGTGCCCCCCCTTTTTCTTTT
CCCTATTTTTCCGATTTCCCCGCTCCTATTCCCCCTCCCCTTTTTCCCCC
CCTTTTCCCCCTTTTTTTTTTTTTTCTCCCCTTCCCCCTTCCTCTCCTTT
TTCCCCTCCCCTTTTTTTCCTATCTCCCCTATTCTTTTCTTTCCCTCGTT
CTACTCTTATATTCTGCCCTTGCCGCTCATTTTATTTTTCCN
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCAGACTGTGATCTGAGAGG
CTGTACCCACCACTCTGTTGGCCTCCTCTGGGAAGTGTGCAGGGCTCCTT
TCCAAATGAGGCTCCAATGCAGGGAGTGCATATCAAGGGTTGCAAAGCAT
CTTGCTCAGAAAGGTGCATCTGCTCTTCTGTTTCACCAGTGGTTTCACGA
ATCTAGGAGAAATAGCCACTGATTTTTCTCTCTCAGAACTTTAGGTGTGA
CACATAAAGCCATGTATTTTTGTTCAATGTTATGCTTTCTATTTGCACAT
CTTCTTGTGCCTATTACAACACCGCACATCCCTGCCTGCTGCTTTGCTTA
TGCTAAGGCTTCCGCCATCACATATGCTACTTCAGCATGCTATGCGGCAT
GAAGATCCCAGTTTATTCACAATATTCCATAGTCACAGTTTGTTTTTTCG
TACAGACTGCAGTTTGCCCCGTCTCATTATTGTTGATTTGCCACGCCATG
CCCTTCACACTAATGGCTTATTTATTTACTTTTCCCCCTTGTTCTCCTCT
CCTCTTGCCTAATTCCGCCCTCTCCTATTTTTTTCTTTTCCCCCTCCCTC
TTTTCACATCCTGCTCTCTGCTTTCCTTCTTTACTCCCTATCTTTCTACA
CCGATTTCCCCGTATCCCTCCCATCTTGTTCCTCTTCTTCACACCTTTAT
CTTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_e14.b1 MSMg01no099_e14.b1 CHROMAT_FILE:
MSMg01no099_e14.b1 PHD_FILE: MSMg01no099_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:41 2005
         (248 letters)



>mm_chr10_29133524_29134171
          Length = 648

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagcagtacccatatccaaaccagctaaggggatgtcaggattctttatggg 64
           |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagcagtacagatatccaaaccggctaaggggatgtcaggattctttatggg 264

                                                                       
Query: 65  aaaaagtctacttttgattatattattttaatatatacactccaccagatatatgaatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaagtctacttttgattatattattttaatatatacactccaccagatatatgaatag 324

                                                                       
Query: 125 atttagttgtggttaggtgtgtatgtttgtaaatctatgagtgccataagagatttttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttagttgtggttaggtgtgtatgtttgtaaatctatgagtgccataagagatttttat 384

                                                                       
Query: 185 gcaaagatatggctaactagaatagagtatcttaattttagtctttccaggtacacattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaaagatatggctaactagaatagagtatcttaattttagtctttccaggtacacattt 444

              
Query: 245 tca 247
           |||
Sbjct: 445 tca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no099_e14.g1 MSMg01no099_e14.g1 CHROMAT_FILE:
MSMg01no099_e14.g1 PHD_FILE: MSMg01no099_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:41 2005
         (218 letters)



>mm_chr10_29235681_29236298
          Length = 618

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaccagactgtgatctgagaggctgtacccaccactctgttggcctcctctgggaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaccagactgtgatctgagaggctgtacccaccactctgttggcctcctctgggaagt 359

                                                                       
Query: 61  gtgcagggctcctttccaaatgaggctccaatgcagggagtgcatatcaagggttgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgcagggctcctttccaaatgaggctccaatgcagggagtgcatatcaagggttgcaaa 299

                                                                       
Query: 121 gcatcttgctcagaaaggtgcatctgctcttctgtttcaccagtggtttcacgaatctag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 298 gcatcttgctcagaaaggtgcatctactcttctgtttcaccagtggtttcacgaatctag 239

                                                 
Query: 181 gagaaatagccactgatttttctctctcagaactttag 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gagaaatagccactgatttttctctctcagaactttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)