BAC Information

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BAC

Clone NameMSMg01-099O01
Chromosome10 (Build37)
Map Location 85,876,432 - 85,876,861
singlet/doubletsinglet
Overlap geneSyn3
Upstream geneBtbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Timp3
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099O01.T7 (MSMg01no099_o01.b1)MSMg01-099O01.TJ (MSMg01no099_o01.g1)
ACCAG315712AG315713
length675793
length of high quality
(start - end)
230 (47 - 276)450 (141 - 590)
definitionCHROMAT_FILE: MSMg01no099_o01.b1 PHD_FILE: MSMg01no099_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:33 2005CHROMAT_FILE: MSMg01no099_o01.g1 PHD_FILE: MSMg01no099_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGCTATTCCCAGAGGATCCGCGGAATTCACGCAGGTCCCGAAGCAGGAG
CTGATGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTTCCCCTGG
CTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATG
GTCCCACCCACAATGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGC
CTTACAGTTGGATCTCATGGAGGCATTTCCCCAACTGAAGCTCTTTTGTG
ATAACTCCAGCTGTGTCAAGTTGATACAAAACTAGCCAGTACAGATGGGT
TTTCCATAATTCTGCATCTGCTCGCCCTTCTTCCGAATACATCACAGAAC
CAAGCCCGAAGCTTATGTCTGAGGACCCCAATCTGTGCTATTTCCACTGC
GTAATGTACAACAGTGTTGGGCTCTCCCCAGATCATGATCTGGACAGCTG
AGAACACCAAGGACCAGAGTCCACAAACCAGAGCCAGCAGTCTTCCTGCC
ATGTTGCCCTAGCTGGCATCCCTATAGTCTAATGTCAGGGACCCGTTGTC
ATTGGCGCATGACTTGTATTCCAGGCCAAAGACCTCTCCATACGATAAAG
GCCCCACTTCATATGTCCCCATCTTACACTGGCTCTGTCTTGCCTCCAAG
GCTTACCTCTCTTTCCCCCTTGAAT
GGCCTCGCCGTCGTTTTTTTCCCGTTTTCCCCTTTTTCCCGCCGCGCTTT
TTTTTTTCTCCCTCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGTTCT
GAACATTTTCCAAAGTAACTTACTAGGAGGGGCTGGAGGATTGGCTCAGC
AAATATGAATGCTTGCATTCAGGGGCCAGCATACACGTTCACAACCTTTT
GTAACTTCAATTTCAGGGGATTTTTTTTTAAAACCTCTTCAGGCACCGGC
ATAGAAGTGAACAAACACACCCAGAGAGAGACATAAAAGTCAATAATAAA
ATAAACTTTAAGAAAATAAAGGAGGGGCTGAAAAGATGGATCATAGGTTA
AGAGCACTAGCTGCTTTTCAATTCCCAGTACCCACATGGCAGCTCACAAC
TGTCTGCAACTTCAGTTCCAGGGGATCCCATACCCACATACAGACATACA
TGCAAGTAAAATACCACCCCACATTTTAAAAAATAAAAAGAAATCATCAG
AAAAGAAGGAAGGAAGGGAGAGAAGGTGAAAGTGAAGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGATTTCTTTCTTCCCCTTTCTTTTTTCTTT
CCCCCCCCGCGTATCCCCATTTATTTCTCGTTCTTTTTGAGCCCCCCCCC
TTTCCTCTATTTTTTTCCCCTCTTCCTTTTCGCCCGCTCCTTTTTCATTG
ACTTGCGCCCAGTCTCACCGGCCCGGTGTTTTTCTCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_o01.g1 MSMg01no099_o01.g1 CHROMAT_FILE:
MSMg01no099_o01.g1 PHD_FILE: MSMg01no099_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:33 2005
         (450 letters)



>mm_chr10_85876432_85877278
          Length = 847

 Score =  737 bits (381), Expect = 0.0
 Identities = 419/433 (96%), Gaps = 3/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacagttctgaacattttccaaagtaacttactaggaggggctggaggattggctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caacagttctgaacattttccaaagtaacttactaggaggggctggaggattggctcagc 371

                                                                       
Query: 61  aaatatgaatgcttgcattcaggggccagcatacacgttcacaaccttttgtaacttcaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 370 aaatatgaatgcttgcattcaggggccagcatacatgttcacaaccttttgtaacttcaa 311

                                                                       
Query: 121 tttcaggggatttttttttaaaacctcttcaggcaccggcatagaagtgaacaaacacac 180
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttcaggggattttttt---aaacctcttcaggcaccggcatagaagtgaacaaacacac 254

                                                                       
Query: 181 ccagagagagacataaaagtcaataataaaataaactttaagaaaataaaggaggggctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 253 ccagagagagacataaaagtcaataataaaataaactttaagaaaataaaggagggactg 194

                                                                       
Query: 241 aaaagatggatcataggttaagagcactagctgcttttcaattcccagtacccacatggc 300
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaagatggctcaaaggttaagagcactagctgcttttcaattcccagtacccacatggc 134

                                                                       
Query: 301 agctcacaactgtctgcaacttcagttccaggggatcccatacccacatacagacataca 360
           |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 133 agctcacaactgtctgcaacttcagttccaggggatgcaacacccacatacagacataca 74

                                                                       
Query: 361 tgcaagtaaaataccaccccacattttaaaaaataaaaagaaatcatcagaaaagaagga 420
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tgcaagtaaaatacaaacccacattttaaaaaataaaaagaaatcatcagaaaagaagga 14

                        
Query: 421 aggaagggagaga 433
           || |||| |||||
Sbjct: 13  agaaaggaagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 847
Length adjustment: 10
Effective length of query: 440
Effective length of database: 837
Effective search space:   368280
Effective search space used:   368280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)