Query= MSMg01no099_o03.b1 MSMg01no099_o03.b1 CHROMAT_FILE:
MSMg01no099_o03.b1 PHD_FILE: MSMg01no099_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:33 2005
(487 letters)
>mm_chr10_25997528_25998411
Length = 884
Score = 872 bits (451), Expect = 0.0
Identities = 474/483 (98%), Gaps = 3/483 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcagaattccaacttatttagaaatagtgtcattgcaactgtaagtagtaatt 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcagaattggaacttatttagaaatagtgtcattgcaactgtaagtagtaatt 264
Query: 65 ggctaagctaaggtcacacaggtgagctgagctccgggtccaggagctaaaactggaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctaagctaaggtcacacaggtgagctgagctccgggtccaggagctaaaactggaaac 324
Query: 125 agaaaaaagcccagaggaaaacagaaaaaaaaatatctataagtcataggagaggctagc 184
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 agaaacaagcccagaggaaaacagaaaaaaaattatctataagtcataggagaggctagc 384
Query: 185 atagaacttagaggctggtttctagtcttgctttgagaactgtgaagcaatacacttcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagaacttagaggctggtttctagtcttgctttgagaactgtgaagcaatacacttcta 444
Query: 245 cgatttatgataatgtggtatgctttaccatggtggtcccactaagctattacaattctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgatttatgataatgtggtatgctttaccatggtggtcccactaagctattacaattctg 504
Query: 305 aattccccagaactaattaactaattacaagcatataagtagctgggtttagcggtgttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 aattccccagaactaattaactaattacaagcatataagtagctgggtttagcggtggtt 564
Query: 365 tttttttttttgattgcttgtttgtttgtttttgtaatcttcctcattccactaaatata 424
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttttt---gattgtttgtttgtttgtttttgtaatcttcctcattccactaaatata 621
Query: 425 gaagaaagggttgttgaagtggctcattggaaaagcttaacaacataagtttcttttctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaagaaagggttgttgaagtggctcattggaaaagcttaacaacataagtttcttttctg 681
Query: 485 gga 487
|||
Sbjct: 682 gga 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 884
Length adjustment: 10
Effective length of query: 477
Effective length of database: 874
Effective search space: 416898
Effective search space used: 416898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_o03.g1 MSMg01no099_o03.g1 CHROMAT_FILE:
MSMg01no099_o03.g1 PHD_FILE: MSMg01no099_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:33 2005
(245 letters)
>mm_chr10_26148183_26148827
Length = 645
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%)
Strand = Plus / Minus
Query: 1 caaacggctcatcaactctctcccaggattgctacttgctgtacattacattctgtttgt 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 caaacggctcaccaactctctcccaggattgctacttgttgtacattacattctgtttgt 385
Query: 61 taaaagaaaatatgtgaactattgttattttaaaaagaacttcaatgtgtgttttaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaagaaaatatgtgaactattgttattttaaaaagaacttcaatgtgtgttttaataa 325
Query: 121 tattcactttagtatctgtaggttctatgcagtaatactgacggtactcattaagccgta 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 tattcactttagtatctgtaggttctatgcagtaatactgagggtactcattaagccgta 265
Query: 181 cgaatgttggtaggtgtaagaaccctcttgcagagttgaaagaagatactacaatgtaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 ggaatgttggtaggtgtaagaaccctcttgcagagttgaaagaagatactacactgtaat 205
Query: 241 taga 244
||||
Sbjct: 204 taga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
