BAC Information

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BAC

Clone NameMSMg01-099O11
Chromosome10 (Build37)
Map Location 41,604,372 - 41,762,803
singlet/doubletdoublet
Overlap geneSesn1, Armc2, 1700016J18Rik
Upstream geneWasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
Downstream geneLOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099O11.T7 (MSMg01no099_o11.b1)MSMg01-099O11.TJ (MSMg01no099_o11.g1)
ACCAG315732AG315733
length721756
length of high quality
(start - end)
469 (43 - 511)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no099_o11.b1 PHD_FILE: MSMg01no099_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:35 2005CHROMAT_FILE: MSMg01no099_o11.g1 PHD_FILE: MSMg01no099_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,604,372 - 41,604,837)(41,762,555 - 41,762,803)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGTCACTGCCCATTTATTTGGGGCAGTGCTTTTTAATGTTTTTTAA
TGGACAGTAAAGTGACTAATTCATAGTACTGCCTATACAAGAGAGCAGCA
GTTAGTACTCTGGAAGTATTTAGGTCAGTCTTTAGAGAGACCATAAAGGA
ATCTTGGATATTTAATAGCTTGAAGGTGCTCAGTAAACTATTGAATTAGA
GTATAAGTTAAATTATTTTTCATTTCATGCAAGACAGCATTAAATAATTG
AAACTATCCAAAAAATTCGATTTATTGTTCCTGATTTTGTTTGGTATATC
TGAACTGTTTTTCACTAATTGATTAATTTATTTATTTATTCCACATCCCA
GTTGCAGACTTCCCTCCCCCCTCCTCTCCGAGTCCCTCCCTTTCACACAC
ACCCCCCAATCTACCCAAGGGAAGGCCTTCTGTGGGGATCAGTCAGCCTT
GGCAGATCAAGTTGCACTAAGACTAGGTCCATCTTTTTCTATGGAGGCTA
GACAAGGTAGCCCAGTTAGGGGAAAGGGATCCGAAGTGCGGCAACAGAGT
CTGAGACAGCCTTTGCTCCTACTGTACGAGTCCCCCTTGAAGACCCAGCT
GTTCAACTTCTATATACGTGCAGAGGGCTAGGCCATGTTTCGTCATTGGT
GGGTCAATTCTCTGTGTATCT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCCCCAGCTCCCAAGTTGGAAGAC
AAGAAAGAATGTTTGCCGAAAATGCTGAATTCACAGAAAGATCCCAGTCA
ATCTGCTGTGACTTCTAGGCTCTAAGAGGGTTGACTTATAGCAGATCAAT
AGGCAGACATTACGATTTGTCTGGGGGGTCACTCAGAGCCCAAGGACCAG
AACAATGCCAGACACTGGAAGAGGCTATGCAACATTGTAATGTCAATTTT
TAACTTTCAGAAGAAGCTAGAATGAACTGTTTTGCATTTCATGAGGATAG
CAAAAGGAGAGTTGGCAGAATCAGCCTCCAATATGCACCACTGGACACAT
GCCAGGGGCCTTCTACTTACCCGCTGCCCTATCCCAATTATCCCTTAGGT
GCAAAGGACCAACCCCCAACTAGGCTCAAGTTTGACTTTATCTTTTGTTT
AACCTCAGGAAGAATCATGATGGTCCTGTCAGACTGTGACATCTCCCCTG
ATCCTAACGACCGCTCTAGAATGCTAGCATACTCCACTCTGCACTCTGTG
ACATGCCCTCATCAACGTCCTTCCGGAACGCTCTTATGCTTTAACTTCTG
CGGGCACTTAACACTGGTACCATTCGCTTCCATTCTTCTTCCCCAGTCTT
GATTTACGGTACCTGACCCATACCCAGAATCACGCGACTTCCTGTACCTC
TGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_o11.b1 MSMg01no099_o11.b1 CHROMAT_FILE:
MSMg01no099_o11.b1 PHD_FILE: MSMg01no099_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:35 2005
         (469 letters)



>mm_chr10_41604169_41605037
          Length = 869

 Score =  839 bits (434), Expect = 0.0
 Identities = 458/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgtcactgcccatttatttggggcagtgctttttaatgttttttaatggac 63
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtcactgtagatttatttggggcagtgctttttaatgttttttaatggac 263

                                                                       
Query: 64  agtaaagtgactaattcatagtactgcctatacaagagagcagcagttagtactctggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtaaagtgactaattcatagtactgcctatacaagagagcagcagttagtactctggaa 323

                                                                       
Query: 124 gtatttaggtcagtctttagagagaccataaaggaatcttggatatttaatagcttgaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatttaggtcagtctttagagagaccataaaggaatcttggatatttaatagcttgaag 383

                                                                       
Query: 184 gtgctcagtaaactattgaattagagtataagttaaattatttttcatttcatgcaagac 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttctcagtaaactattgaattagagtataagttaaattatttttcatttcatgcaagac 443

                                                                       
Query: 244 agcattaaataattgaaactatccaaaaaattcgatttattgttcctgattttgtttggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcattaaataattgaaactatccaaaaaattcgatttattgttcctgattttgtttggt 503

                                                                       
Query: 304 atatctgaactgtttttcactaattgattaatttatttatttattccacatcccagttgc 363
           ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 504 atatctgaactgttttttactaatttatttatttatttatttattccacatcccagttgc 563

                                                                       
Query: 364 agacttccctcccccctcctctccgagtccctccctttcacacacaccccccaatctacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agacttccctcccccctcctctccgagtccctccctttcacacacaccccccaatctacc 623

                                                         
Query: 424 caagggaaggccttctgtggggatcagtcagccttggcagatcaag 469
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaggggaggccttctgtggggatcagtcagccttggcagatcaag 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no099_o11.g1 MSMg01no099_o11.g1 CHROMAT_FILE:
MSMg01no099_o11.g1 PHD_FILE: MSMg01no099_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:35 2005
         (249 letters)



>mm_chr10_41762355_41763003
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccccagctcccaagttggaagacaagaaagaatgtttgccgaaaatgctgaattcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgccccagctcccaagttggaagacaagaaagaatgtttgccgaaaatgctgaattcaca 390

                                                                       
Query: 61  gaaagatcccagtcaatctgctgtgacttctaggctctaagagggttgacttatagcaga 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaaacctcccagtcaatctgctgtgacttctaggctctaagagggttgacttatagcaga 330

                                                                       
Query: 121 tcaataggcagacattacgatttgtctggggggtcactcagagcccaaggaccagaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcaataggcagacattacgatttgtctggggggtcactcagagcccaaggaccagaacaa 270

                                                                       
Query: 181 tgccagacactggaagaggctatgcaacattgtaatgtcaatttttaactttcagaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgccagacactggaagaggctatgcaacattgtaatgtcaatttttaactttcagaagaa 210

                    
Query: 241 gctagaatg 249
           |||||||||
Sbjct: 209 gctagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)