BAC Information

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BAC

Clone NameMSMg01-100F14
Chromosome10 (Build37)
Map Location 26,763,781 - 26,764,250
singlet/doubletsinglet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100F14.T7 (MSMg01no100_f14.b1)MSMg01-100F14.TJ (MSMg01no100_f14.g1)
ACCAG316072AG316073
length710731
length of high quality
(start - end)
470 (69 - 538)187 (68 - 254)
definitionCHROMAT_FILE: MSMg01no100_f14.b1 PHD_FILE: MSMg01no100_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:11 2005CHROMAT_FILE: MSMg01no100_f14.g1 PHD_FILE: MSMg01no100_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTGTGCCAGAGTTTGCAGATAGAACTTGTGTAATTTCTGTTTG
AGTCATAAATTTAACAAACTGCAAGAGTTTGCCTTGGTTAGAACTCATAC
ACAATTTGTTATTTTCACTTCATTAACATGGAAGGCTATTACCATTGAAT
TTGAGAACAGAAAAAAAAATTTTTTATTCTTATTTTGATTTTCTTTTTAA
ACAGCTAGATCTGACCAAAGCATAATGCAAAACAAATATCAGCACACTGA
CAAAAAGAGATATGCCTGGATACAGGAAAGAATTGTTACCAGTTTATACT
TATAACTTAACTAGAACTGCAAACATTCCACAGCTAAGATTATGAGATTT
AATCCATGAAAAGCTACTTCAGATATTTTTCTGGAGCTGTTACTATATTC
TATATAGTTTTCTAACTGATTAACCTTTGACTGCCACACATACCCAGTAG
CTTTTAAAAAGTTGTATATTAGACTTACAAATTTGGCACTTCCAAGATAA
AAAAGGAGGTTGTCGGCAACAGAAGTCTTGACATGGACAACGATGTTATT
GTAGCTTCCTTTCATGATTTCCGGCCCGCATGCTCGACCACTGTCCCCTC
CCGAAGAAACAGATACCTTGATCTTCAAAGAGAACAAGATATCTCACCCT
ATTGAGTCTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTAGCGGAATTCCATATAATACATTTCAAAAGATAGAAA
ATAAGAAAGTTTGAAAGCTTGCTGATATACAAAGTTTCAAAGGAAGATAG
AAAGAAAGAAAAAAGAAGAAGAGAGAGAGAGGAAGGAAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GACGGACCTACAGTAGCATATCCTTCTGCTCCCTCCGTATGTGGCCGATC
GCGACTCCTGCGCTGCTTTTTTTTCTCTACCACCCACCTCCTCCTTTCAT
CAGGACGTTTTTCCCTCCCCCACCCCCCCACCTATCTCACGTGTATGATC
TTTTCTAATGCTGGCCCCCTCCTTTTCACCCATTCCGTTCGCGCCCTTGC
AACCGGTTGTCATCTAACGCACGCGTGTTCTGAACCTGGGCGCACTACCT
GTTGGGACAGCGCTTAGTTCTAATCCGACCACGCTATTCCCTCTCCCTCT
TCTATCTCTTTGTACCCTTGTTCCTGTTTGTTTCCGTTCCATCTAACCCT
TCCCACCTTCGTTTCCTCTTCCCTTCTTTCTCCCCCCCCCTCGTTTACCC
GCTATCCGCTCCCTTAATCCCCATCCTCCTCACCCCTCATACTCCCAATA
TCTTCTATTTTTTATTCACCCTTACTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_f14.b1 MSMg01no100_f14.b1 CHROMAT_FILE:
MSMg01no100_f14.b1 PHD_FILE: MSMg01no100_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:11 2005
         (470 letters)



>mm_chr10_26763581_26764450
          Length = 870

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcagatagaacttgtgtaatttctgtttgagtcataaatttaacaaactgcaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcagatagaacttgtgtaatttctgtttgagtcataaatttaacaaactgcaagagt 260

                                                                       
Query: 61  ttgccttggttagaactcatacacaatttgttattttcacttcattaacatggaaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgccttggttagaactcatacacaatttgttattttcacttcattaacatggaaggcta 320

                                                                       
Query: 121 ttaccattgaatttgagaacagaaaaaaaaattttttattcttattttgattttcttttt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactattgaatttgagaacagaaaaaaaaattttttattcttattttgattttcttttt 380

                                                                       
Query: 181 aaacagctagatctgaccaaagcataatgcaaaacaaatatcagcacactgacaaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagctagatctgaccaaagcataatgcaaaacaaatatcagcacactgacaaaaaga 440

                                                                       
Query: 241 gatatgcctggatacaggaaagaattgttaccagtttatacttataacttaactagaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatgcctggatacaggaaagaattgttaccagtttatacttataacttaactagaact 500

                                                                       
Query: 301 gcaaacattccacagctaagattatgagatttaatccatgaaaagctacttcagatattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaacattccacagctaagattatgagatttaatccatgaaaagctacttcagatattt 560

                                                                       
Query: 361 ttctggagctgttactatattctatatagttttctaactgattaacctttgactgccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctggagctgttactatattctatatagttttctaactgattaacctttgactgccaca 620

                                                             
Query: 421 catacccagtagcttttaaaaagttgtatattagacttacaaatttggca 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catacccagtagcttttaaaaagttgtatattagacttacaaatttggca 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)