BAC Information

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BAC

Clone NameMSMg01-101J04
Chromosome10 (Build37)
Map Location 67,390,760 - 67,552,865
singlet/doubletdoublet
Overlap genePlekhk1
Upstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365
Downstream geneArid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101J04.T7 (MSMg01no101_j04.b1)MSMg01-101J04.TJ (MSMg01no101_j04.g1)
ACCAG316951AG316952
length710708
length of high quality
(start - end)
634 (75 - 708)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no101_j04.b1 PHD_FILE: MSMg01no101_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:50 2005CHROMAT_FILE: MSMg01no101_j04.g1 PHD_FILE: MSMg01no101_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,390,760 - 67,391,393)(67,552,578 - 67,552,865)
sequence
NNAAATCTATAATTGCGGCGCTAAACGACTCCTATATTCAGAAATGCGCG
GAATTCAAATCCAGTTTCTGCTAGTTTTGAAATCAAAAGCAGTCCTCGGT
CCAAGGTTCTACAGATGGCGAACAATGTTGAGGTTAAGAAATAACTTTCA
GGCACATATCAATCAAGAGCCCTCACACCCCCCAACGTGAGCTAAAGAGG
AAGCAGATGGTAGAACCTGTCAATTTCTTTGTGAAGAGTTTAGAAAAACC
TAAAGCAATGCCCCGGGGGATTGTTCTGGGAGAGGAAAAGTTCTGCAAGG
ATTGGAAAGCTGTATTCCCAGCCTCAGAAGCCTATGGCTGAGACGAGCTT
CCAAAGAAGGCATTGGTGAGTACAGCTCTTCGTTCATACATGCCAGTGAG
ATGCAGACCAAAAATAAAACGTTTTTCAAAATTAAAAGGAATTACACTAA
CTGAAATCATCCTTGGGCAGAAAGAGATGGAGACATCAACAAAATGACAG
GAAGCCTTTGAGTTCAGACAGTGGATAAAGACAGAACGGGACTAAGGATC
CAGAGAATGAACCAAAGGCAGAACAATGCCAATACAACTCTGATTAGACC
AGAAAGGGTGAAACAAGAAATGCAGAAAATGGCGCAAAGATGTCTCAGAA
CCTTCAATCCAGAGAGGGGACCAAAGAAGGCGTGGAACCAGGAGTCCAGA
GAGTGGGCCA
NNNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTGAAATTCTGTCCGTTACATTTGAGGAGC
CACATGTAGCGGGATATCAAACGGGACAATGAAGATCTAGAAAAGCCAGA
TGGCCAATCTGTCTTTGGCTACACTAACTGCAGATATTCCGTGTCTCCCC
AACACAGTAAAGCAATGACACTGTGCCTCTCCTTCCCCATCCCCCCCAAA
AAAGAAAGAAGAAATTAATTCATGAATGGTGATGCTCTATTTCATTGTGG
ATTTACACACTGCAGGAGTTAAATTCTCACTTAAGGAGTAAGTCAGTCAC
TGAACAAGCAACCACTATGAGGTGCTCACGGGTATGGCCTCTGGCTCCAG
CCCGACTTTTTTGGTTAAATCTAATGATGGGAAGAATAAACTCAGTTTTC
AGAAAGTCTGTAACGTGCTAGATACAGCCACATTCAAGTCACCCTACTTC
ATTCTATGGTAGCTTATCATCCACTGTAAAGCCCAGAGAACCGCCAACCT
GATATAGATTGCCTCGGATCAAGGCCCTCGGGGTGGGGCACAGCATCTTG
TATAGCTAAGTCCACTGAAACCCCTGTTTTGGAGTTTTTTTCTAGGCTGT
GACTGACCCTTCACTGATGCAGCGACCACTGTAAGAAATTAACGATCCGA
ACCATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_j04.b1 MSMg01no101_j04.b1 CHROMAT_FILE:
MSMg01no101_j04.b1 PHD_FILE: MSMg01no101_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:50 2005
         (634 letters)



>mm_chr10_67390560_67391593
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgaaatcaaaagcagtcctcggtccaaggttctacagatggcgaacaatgttgaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgaaatcaaaagcagtcctcggtccaaggttctacagatggcgaacaatgttgaggt 260

                                                                       
Query: 61  taagaaataactttcaggcacatatcaatcaagagccctcacaccccccaacgtgagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagaaataactttcaggcacatatcaatcaagagccctcacaccccccaacgtgagcta 320

                                                                       
Query: 121 aagaggaagcagatggtagaacctgtcaatttctttgtgaagagtttagaaaaacctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaggaagcagatggtagaacctgtcaatttctttgtgaagagtttagaaaaacctaaa 380

                                                                       
Query: 181 gcaatgccccgggggattgttctgggagaggaaaagttctgcaaggattggaaagctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaatgccccgggggattgttctgggagaggaaaagttctgcaaggattggaaagctgta 440

                                                                       
Query: 241 ttcccagcctcagaagcctatggctgagacgagcttccaaagaaggcattggtgagtaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccagcctcagaagcctatggctgagacgagcttccaaagaaggcattggtgagtaca 500

                                                                       
Query: 301 gctcttcgttcatacatgccagtgagatgcagaccaaaaataaaacgtttttcaaaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcttcgttcatacatgccagtgagatgcagaccaaaaataaaacgtttttcaaaatta 560

                                                                       
Query: 361 aaaggaattacactaactgaaatcatccttgggcagaaagagatggagacatcaacaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggaattacactaactgaaatcatccttgggcagaaagagatggagacatcaacaaaa 620

                                                                       
Query: 421 tgacaggaagcctttgagttcagacagtggataaagacagaacgggactaaggatccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacaggaagcctttgagttcagacagtggataaagacagaacgggactaaggatccaga 680

                                                                       
Query: 481 gaatgaaccaaaggcagaacaatgccaatacaactctgattagaccagaaagggtgaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatgaaccaaaggcagaacaatgccaatacaactctgattagaccagaaagggtgaaac 740

                                                                       
Query: 541 aagaaatgcagaaaatggcgcaaagatgtctcagaaccttcaatccagagaggggaccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaaatgcagaaaatggcgcaaagatgtctcagaaccttcaatccagagaggggaccaa 800

                                             
Query: 601 agaaggcgtggaaccaggagtccagagagtgggc 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 agaaggcgtggaaccaggagtccagagagtgggc 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no101_j04.g1 MSMg01no101_j04.g1 CHROMAT_FILE:
MSMg01no101_j04.g1 PHD_FILE: MSMg01no101_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:50 2005
         (289 letters)



>mm_chr10_67552378_67553066
          Length = 689

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtccgttacatttgaggagccacatgtagcgggatatcaaacgggacaatgaagatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtccgttacatttgaggagccacatgtagcgggatatcaaacgggacaatgaagatcta 429

                                                                       
Query: 61  gaaaagccagatggccaatctgtctttggctacactaactgcagatattccgtgtctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaaaagccagatggccaatctgtctttggctacactaactgcagatattccgtgtctccc 369

                                                                       
Query: 121 caacacagtaaagcaatgacactgtgcctctccttccccatcccccccaaaaaagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caacacagtaaagcaatgacactgtgcctctccttccccatcccccccaaaaaagaaaga 309

                                                                       
Query: 181 agaaattaattcatgaatggtgatgctctatttcattgtggatttacacactgcaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaattaattcatgaatggtgatgctctatttcattgtggatttacacactgcaggagt 249

                                                           
Query: 241 taaattctcacttaaggagtaagtcagtcactgaacaagcaaccacta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taaattctcacttaaggagtaagtcagtcactgaacaagcaaccacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)