BAC Information

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BAC

Clone NameMSMg01-101P22
Chromosome10 (Build37)
Map Location 6,273,008 - 6,273,528
singlet/doubletsinglet
Overlap geneMthfd1l
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P22.T7 (MSMg01no101_p22.b1)MSMg01-101P22.TJ (MSMg01no101_p22.g1)
ACCAG317260AG317261
length726731
length of high quality
(start - end)
594 (55 - 648)298 (75 - 372)
definitionCHROMAT_FILE: MSMg01no101_p22.b1 PHD_FILE: MSMg01no101_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:26 2005CHROMAT_FILE: MSMg01no101_p22.g1 PHD_FILE: MSMg01no101_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATGGCGCGGAT
TCCAGCCCATGTTCTGCTCAAGGACTTTTTAAGAAGTTGGAACACTTGTG
AAGGCTTAGCTATGTCAGAATTACATCTTAAAAGGCACTTATAATAAGAT
AATACTAAAAGAGAGCACGTGGATCCATACACCAGACTAACACGGGAATG
GAATATGAATGTATGGGTTAGAGAGAACGCCAGCCTCCAGGAGGTGAGTT
TCTGTAAAACTCTCTGCCTCGTGAGTGGCTTCCAGGCCTCTCGGCCTGTC
AAGCTGACTCGACCAGAGTGCCATATTTGTTTTGCTACAAGGTCAAGTAA
GTCACCCATCAGTATTTTAGAAGTTCTCCTGGAAGTCAGCTGCTTGACTC
TGTTCCCTACTAAGCTGTGAAGATAAACACAGGATTCAAATACTGGAGTC
AGGGATGCTCCATGGTTTCCTCTGTCCTGGGTACCAATGCCGAGCAAAAC
AGGCCAAAGCTACCGGGGTCTGCCGTGAGAAAGAAACAGGCAAGCCAGTT
CTTTTGCTCCTTACATAAAGATTGTAGGTAGTAAATCCTCTGTCAGCCAT
GTGTGTTTAAGAACCATCCCTAGGGTTCTGAGAGATGCTTTATCTCCATT
GATAGAGCACCTGCCATACGTGTCTGAGGACTTGAATTTGGATCTCCAGC
ACTGGAGGGTGTGATAGGAGGATGCC
CAATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCGAATTCTTTGAGAATTTGTTTTGAGGCTTAATTA
ACTGGAATGGCAAAGACTGCTTATGCCTGTAATTCTCTAGTTTGTTTGTT
TGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCAAAACAATGTTTTTCT
GTGTCCTGGGTGTCCTGGAACTGGCCCAGTAGACCGGACTGGCTTCAAAC
TCAGAGAGCTACCTGAGAGCTGTTCATTGCCTACAGAGTGCTGGGATTAA
TGGCTTGTGCCACCACTGCCTGGTTTTTTCTGTAACTCTTACCCTGATTT
TGTTTAGTCATTTTTCCATGCCTCCCCTCATCAACTTTATTTGCTAAATT
CACCTATTTATTTTTAGGGAGGTGATCTTGAAATTATTCTAATCTTCTTA
ATGAATTAAACATTATTTGATTAAAGGCACATATCTTTAATCTTGGAATT
TGTGAAGCATAGGCAGGATGATCCAGGTACTTCAAATTTTCCTCAACTAT
ATAGTATGCTTGAGGCCAGCCTCGGCTACCTGATCTTTTATCGGTCAACA
ATAAAAACAAGTTATTTTATAGATGATGCCTCAATGCTTAACACTTCTTC
CTGTTCTTTCAACGTACTCGTATCCCATTACCATTCCCCCACCCAAACGC
TGATTGCGTGGTTGTACCTGGTTTGTGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p22.b1 MSMg01no101_p22.b1 CHROMAT_FILE:
MSMg01no101_p22.b1 PHD_FILE: MSMg01no101_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
         (594 letters)



>mm_chr10_6272535_6273528
          Length = 994

 Score =  890 bits (460), Expect = 0.0
 Identities = 511/534 (95%), Gaps = 14/534 (2%)
 Strand = Plus / Minus

                                                                       
Query: 62  cagaatt-acatcttaaaaggcacttataataagataatactaaaagagagcacgtggat 120
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cagaattca-atcttaaaaggcacttataataagataatactaaaagagagcacgtggat 936

                                                                       
Query: 121 ccatacaccagactaacacgggaatggaatatgaatgtatgggttagagagaacgccagc 180
           ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 935 ccatacaccagactaacgcggaaatagaatatgaatgtatgggttagagagaacgccagc 876

                                                                       
Query: 181 ctccaggaggtgagtttctgtaaaactctctgcctcgtgagtggcttccaggcctctcgg 240
           |||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||
Sbjct: 875 ctccaggaggtgagtttccgtaaaa--ctctgcctcgtgagtggcttccaggcctctcgg 818

                                                                       
Query: 241 cctgtcaagctgactcgaccagagtgccatatttgttttgctacaaggtcaagtaagtca 300
           |||||||||||||||||||||     ||     |||||||||||||||||||||||||||
Sbjct: 817 cctgtcaagctgactcgacca-----cc-----tgttttgctacaaggtcaagtaagtca 768

                                                                       
Query: 301 cccatcagtattttagaagttctcctggaagtcagctgcttgactctgttccctactaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cccatcagtattttagaagttctcctggaagtcagctgcttgactctgttccctactaag 708

                                                                       
Query: 361 ctgtgaagataaacacaggattcaaatactggagtcagggatgctccatggtttcctctg 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctgtaaagataaacacaggattcaaatactggagtcagggatgctccatggtttcctctg 648

                                                                       
Query: 421 tcctgggtaccaatgccgagcaaaacaggccaaagctaccggggtctgccgtgagaaaga 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tcctgggtaccagtgccgagcaaaacaggccaaagctaccggggtctgccgtgagaaaga 588

                                                                       
Query: 481 aacaggcaagccagttcttttgctccttacataaagattgtaggtagtaaatcctctgtc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 587 aacaggcaagccagttcttttgctccttacataaagattgtaggtagtaaatcctcggtc 528

                                                                 
Query: 541 agccatgtgtgtttaagaaccatccctagggttctgagagatgctttatctcca 594
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 527 agccatgtgtgtttaagagccatccctagggttccgagagatgctttatctcca 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)