BAC Information

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BAC

Clone NameMSMg01-102E16
Chromosome10 (Build37)
Map Location 74,003,532 - 74,003,699
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E16.T7 (MSMg01no102_e16.b1)MSMg01-102E16.TJ (MSMg01no102_e16.g1)
ACCAG317478AG317479
length719709
length of high quality
(start - end)
182 (128 - 309)79 (161 - 239)
definitionCHROMAT_FILE: MSMg01no102_e16.b1 PHD_FILE: MSMg01no102_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:50 2005CHROMAT_FILE: MSMg01no102_e16.g1 PHD_FILE: MSMg01no102_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAACAGGCGCGGAATTCCA
TTCTATTACCTCAACCTCAGCCTCTAACATACTTATTAACAACTGACAAA
GCTTCACAAATGTCCCACCTAGATGTTATTTCTTATGCTTTCAGAAACAG
AATTATAATAAAATAAAAGGTCTGGTATCTGTATGCATAAAAACGCCTTT
TCAAAAACTTTTCAAAAACTATTTCAAAAACAAAATTCTCTGTGCCCTAT
TCCTTCTAAATTACAAGGCACAGTTTTAAATATTCTCCTGGATCTTAAAA
TGATCTAAGTGATTTTTTTTTTGAAATTATTTTGTGCATGCTATCAGATG
CTTGGGTCAGAATACCTTGCTGACTCGTCTAGTTGTATAATTTTAAGTAT
GTTTTTCAATTTTCTTTAAGCCCCATTATGTTCATTGATAACAATAAAGA
CAATTAATGACCCCCTAATATTTTATTACACAATTAAATGGAAATAGCAC
TCAAAAAGCACTTAACTCACAACGCTCCCAAGGTTGTCCAAACTATCATT
AATATTCCTAACACCTGGCTATGTTTCCTGCCATAATGCACCGATTCAAA
ATACACAAATTATGTATTATTAAAATACCTTTTATCTTCCCCCACTTTCG
CAACTTTGACTTCCCCTTTAACATTCTTCTGCTATTTTACCCCCCTCATT
TTGTTATTTTCGCCAACCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCTTAAGATGAAACGAACTTTCCTTTCTTTC
AGAGAAGGTTCGACCCCCTTTGAAGTATTAAATATGTAAGATCACCAGAA
AGGCAGAGGGGACAACATAGACTGATTTTATTGGCTACCACTTCAATGCT
TCTTGGGAAAAAATGTATTAATAAGGTAGATTGCGAAACAGAAGGATACT
CACGGTCCTCCTCCAGCCCCAGCACATGTACCCATGCCCCCAAGCACTGC
GCACAGACACTGTTTGTCTACACAAGCTCACAAATCTCTGCATTTATCTG
GCATCTTTTATTACCTCCCCCCGCCTAATTTATGGGCAATTTAAATGTTA
TCTCCTGCATAATTATAATGTAATACCAGAACCGGTTTGTGAAGCATCCA
TCCTCCAATTTTTCAATACCGCTTCATCACACTAACTGCCCACCTCCTAT
TATTTTCTTCTGTGAAAGCAAAGCGCGTAATTGCTAACCCAATTTTCTAG
ACCCTATTGTAAATTTATACATTTCTCTTCAAACAGCTCAGCATTCATCT
CGAAAACAATAATATTCCCCTCTACACCCAACCATTATTCACCCTCTCAT
CCAGTTTTACTCACCTTCCCCGCTTCCCTGGCTTATCACCACACTATCTG
CCTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e16.b1 MSMg01no102_e16.b1 CHROMAT_FILE:
MSMg01no102_e16.b1 PHD_FILE: MSMg01no102_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:50 2005
         (182 letters)



>mm_chr10_74003321_74003899
          Length = 579

 Score =  244 bits (126), Expect = 3e-69
 Identities = 162/182 (89%), Gaps = 14/182 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcttatgctttcagaaacagaattataataaaataaaaggtctggtatctgtatgca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atttcttatgttttcagaaacagaattataataaaataaaaggtctggtatctgtatgca 271

                                                                       
Query: 61  taaaaacgccttttcaaaaacttttcaaaaactatttcaaaaacaaaattctctgtgccc 120
           |||||| ||||||||||||||| || |          ||    |||||||||||||||||
Sbjct: 272 taaaaatgccttttcaaaaactattga----------ca----caaaattctctgtgccc 317

                                                                       
Query: 121 tattccttctaaattacaaggcacagttttaaatattctcctggatcttaaaatgatcta 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 318 tattccttctaaattacaaggcagagttttaaatattctcctggatcttaaaatgaccta 377

             
Query: 181 ag 182
           ||
Sbjct: 378 ag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 579
Length adjustment: 8
Effective length of query: 174
Effective length of database: 571
Effective search space:    99354
Effective search space used:    99354
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)