BAC Information

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BAC

Clone NameMSMg01-103H12
Chromosome10 (Build37)
Map Location 104,978,484 - 104,978,618
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103H12.T7 (MSMg01no103_h12.b1)MSMg01-103H12.TJ (MSMg01no103_h12.g1)
ACCAG318328AG318329
length743717
length of high quality
(start - end)
---134 (76 - 209)
definitionCHROMAT_FILE: MSMg01no103_h12.b1 PHD_FILE: MSMg01no103_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:24 2005CHROMAT_FILE: MSMg01no103_h12.g1 PHD_FILE: MSMg01no103_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAACCTCTGTCTCTAAATTTGCGGCGCTATACGACTACTATATCCAGAA
GACGGCGGAATTCATTAGTTTTTCCCGTCATTTGAACAGTTAATATGCTG
TTTTAAAACATGTGTTTAAGCTCTGGGAAGAACCTAAAACTCTTGAGTAG
TAGAGTTTTGTTTGTTTTTCTTTGTCTTGTAAAAAAAACTCAAACATTCT
CGGAGAAATTTACTTTGCTTGCTTTATAAATCTTGCATAAATGATAGTAG
GAACAACTTTTTTGGCCTTTTTTTATCAGATATTTTCTTCTTTTCCATTT
CAGATGTTACCCCCCCTTTCCTAGTTTCCCCTCTGTATAATCCCCTATCC
CCTCCTCTCACTGCTCCCAAACTCATCTTCTCCCGGCTTCCTGGCCCTGG
TCTTCTCCTTTTCTAGGTCATAAAACCTCTTCAACTTTCATAACCTTACT
GTATCCCATAATACATCAACATCGATTCATACCTCAATAAAGTCCTTCCG
CAATAATCATCTCCTTGCTTTACGTCCCCACATCCTCTATTCACTATACA
CATATCACACTTATTACCTTCCATTATTTATCCATCTTTATCCCCTCTCC
AAATAATCTACGTGCACATATGCCCGATTCATATCTAGTCCTCTCTCATT
TTTGTTATCCTTATTTAATCTTTCCATTATTTTTCCCCCCTACATCCGAT
CCATTCCACTGACCTTATTATTATCTCTAACTGTCATGAAGTT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGGAACCCACAGAAATGTTGAAAACTT
TCCTGAAAGCAAGAGGAAATTGTACACATTTTAAAGGTTCCATTCTTTTT
AGTACAAATGCCTGTGTTCTCTCATCTATATATATAACAAAAATTGTTCA
GACTAGAGATACACCTCAGGTGGTAGAGTTTCCCAACATGCATGACATCC
TGGGTTTGACTGTAAAGAGCATATAAAACAGACTCTTGAGCATTGATAGC
ATTGACACGACCAGTTCAAGGTCATCCCCTGTTATATAGATTTAGGACAG
CCTGGGCTAATCTATCTCAAAGGGTAAAGGTTTCTCAAATATGACTCTTC
TCTTCCTCGGCAGTACCTAGCTTGTCGTCTCATTTACCATTCGCCATCTC
AGACCATATTGTGTACAATGAGGTATATGTTTCTCTTGACGATCGACTCT
TATTTACCAGACATCGGAGGCATAGGTATTATTGCTACTGAGAAGGTGCC
GACCATTCCCCTTGACCCGTGCGTCCTTTTCATTAACTCCCTTTATCACA
ACTCCTTAGCACTGTTTTTCCATTCAAAGCGTTTATTTTACCCCCTCCCA
TTTGCTCTTTTCTCTCCCGATGACGCAATTATTCCCATTCCTTGTATTTT
TCCCCGTATTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_h12.g1 MSMg01no103_h12.g1 CHROMAT_FILE:
MSMg01no103_h12.g1 PHD_FILE: MSMg01no103_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:24 2005
         (134 letters)



>mm_chr10_104978284_104978818
          Length = 535

 Score =  223 bits (115), Expect = 5e-63
 Identities = 130/135 (96%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacccacagaaatgttgaaaactttcctgaaagcaagaggaaattgtacacattttaaa 60
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gaactcacagaaatgtttaaaactttcctgaaagcaagaggaaattgtacacattttgaa 260

                                                                       
Query: 61  ggttccattctttttagtacaaatgcctgtgttctctcatctatatatataacaaaaa-t 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 261 ggttccattctttttagtacaaatgcctgtgttctctcatctatatatataaaaaaaaat 320

                          
Query: 120 tgttcagactagaga 134
           |||||||||||||||
Sbjct: 321 tgttcagactagaga 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 535
Length adjustment: 8
Effective length of query: 126
Effective length of database: 527
Effective search space:    66402
Effective search space used:    66402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)