BAC Information

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BAC

Clone NameMSMg01-103L09
Chromosome10 (Build37)
Map Location 19,572,129 - 19,572,762
singlet/doubletsinglet
Overlap genenone
Upstream genePerp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3
Downstream genePex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103L09.T7 (MSMg01no103_l09.b1)MSMg01-103L09.TJ (MSMg01no103_l09.g1)
ACCAG318511AG318512
length711709
length of high quality
(start - end)
621 (50 - 670)548 (74 - 621)
definitionCHROMAT_FILE: MSMg01no103_l09.b1 PHD_FILE: MSMg01no103_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:43 2005CHROMAT_FILE: MSMg01no103_l09.g1 PHD_FILE: MSMg01no103_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTGTACGCAAGTTATGTTCTGACCCTCAGAAAACTCAGC
AGCGCAGAGCCACTAGCTTGGCTTCTGTAATTGCCAGCTACAGTCGTTTT
TTTTTCCATGCTATTTAAAATTTATAGCGATGTCCAAGCTTCCGCTGAGA
AGCTAAGGATTTGAGGTCTCTGGTCTCTGTGTCAAGTCCCTTTCAGTCAC
TGGGGTCTCATCTCTTAACGACTGGAATTTCAAACCTTTAAACACCACAT
CTCCTTGCCTGGGCACATGGGTACATTTTCTCGAAATCTTTTATCTTCAT
GGTTTTGCACTTCTATGATGCACCCAACCGTGGGGTACAGATGTAGAAAT
GGATTATTAGCTCAGCAGGAGGAAGAAATTGGAACAGGAATTAGAACCAG
GTTCACTGCAGTTTCTCATGTGGGCCAGCTTTTGTATTGTGGGTGCTCTC
GTGAGAAAGCACACCATCTCAGCCATAGGCAGGCTTAGGCTAGCGCCCAG
CACAGCCACCTGCTGTGTCCCTGACAGGTGTGCACTCAGGTAAGTATGGG
TCCCCGCAAAGCTGACTTTGCAGGAATAACCCCTAGCTGCACTGTGCTTC
AAAGTTTCCGGTTCCCCAGTAGCTCTTGGGCTTTGGTTCCCCTGGGAACG
CTTCAGNTTTN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGACTCAGAAGTAAAATGTCTGCC
TGAGCACAGCTTTGTTTAAAAGACAGAAGGGCCAGCCAGATGGCTTAGCA
GGCAACTATGCTTGCTACCAAGTCTGATGTCCTAGGTTCAATCCCTGAAA
TCTATATAGGAAGAGAAATCCAACTCCCACCAGTTGCCCTCTGATTTCCA
CAGGTGAGCCACGAATCATGCCCTTTTTCTACAATATTAAAAAAAAAGAT
AAATATAATTTTAAAAATCCTTAATAAAAAAAAAGGAAGAATCTTCCCCC
TTTGTGCTGTGCCCTGCACAGTCGACACAGAACAAGGACTTTAAGATTGC
ATTTTATTTATTTGTTTGTTCCCTTATTTGAGACAGGTTTTCTACCTGTA
TCTTTGGCTGCCCTGGAACTCGAGCTGTATAGCTGAGCTAGCCTCGAACT
CACAGAGCTCTACCTGCCTCTGCCTCCCAAATGCTGGGATTAAGGGTGTG
TGCCACCACTGCCTACTTTTTTGACTTTAAGAATTGTTTAAGGGACTAAG
TTGGTGTTTTCTATTTCCCTGAACATTTATTCAGACTTTGCAGAGAATAT
ATTTCCATTATTTTCCCCCATAAGCCTATTGAATACTCCAAATCCACATG
AACTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_l09.b1 MSMg01no103_l09.b1 CHROMAT_FILE:
MSMg01no103_l09.b1 PHD_FILE: MSMg01no103_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:43 2005
         (621 letters)



>mm_chr10_19571941_19572962
          Length = 1022

 Score = 1079 bits (558), Expect = 0.0
 Identities = 607/634 (95%), Gaps = 17/634 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgtacgcaagttatgttctgaccctcagaaaactcagcagcgcagagccac 64
           ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 189 gaattcacttgcaggcaagttacgttctgaccctcagaaaactcagcagcgcagagccac 248

                                                                       
Query: 65  tagcttggcttctgtaattgccagctacagtcgttttttttt-----------------c 107
           ||||||||||||||||||||||||||||||||||||||||||                 |
Sbjct: 249 tagcttggcttctgtaattgccagctacagtcgtttttttttttttttttttttttttcc 308

                                                                       
Query: 108 catgctatttaaaatttatagcgatgtccaagcttccgctgagaagctaaggatttgagg 167
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catgctatttaaaatttatagtgatgtccaagcttccgctgagaagctaaggatttgagg 368

                                                                       
Query: 168 tctctggtctctgtgtcaagtccctttcagtcactggggtctcatctcttaacgactgga 227
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctctggtctctgtgtcacgtccctttcagtcactggggtctcatctcttaacgactgga 428

                                                                       
Query: 228 atttcaaacctttaaacaccacatctccttgcctgggcacatgggtacattttctcgaaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 429 atttcaaacctttaaacaccacatctccttgcctgggcacatgggtacatttcctcgaaa 488

                                                                       
Query: 288 tcttttatcttcatggttttgcacttctatgatgcacccaaccgtggggtacagatgtag 347
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcttttatctttatggttttccacttctatgatgcacccaaccgtggggtacagatgtag 548

                                                                       
Query: 348 aaatggattattagctcagcaggaggaagaaattggaacaggaattagaaccaggttcac 407
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaacggattataagctcagcaggaggaagaaattggaacaggaattagaaccaggttcac 608

                                                                       
Query: 408 tgcagtttctcatgtgggccagcttttgtattgtgggtgctctcgtgagaaagcacacca 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgcagtttctcatgtgggccagcttttgtattgtgggtgctctcgtgagaaagcacacca 668

                                                                       
Query: 468 tctcagccataggcaggcttaggctagcgcccagcacagccacctgctgtgtccctgaca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tctcagccataggcaggcttaggctagcgcccagcacagccacctgctgtgtccctgaca 728

                                                                       
Query: 528 ggtgtgcactcaggtaagtatgggtccccgcaaagctgactttgcaggaataacccctag 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggtgtgcactcaggtaagtatgggtccccgcaaagctgactttgcaggaataacccctag 788

                                             
Query: 588 ctgcactgtgcttcaaagtttccggttccccagt 621
           ||||||||||||||||||||||||||||||||||
Sbjct: 789 ctgcactgtgcttcaaagtttccggttccccagt 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space:   618332
Effective search space used:   618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)