Query= MSMg01no103_m09.b1 MSMg01no103_m09.b1 CHROMAT_FILE:
MSMg01no103_m09.b1 PHD_FILE: MSMg01no103_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:48 2005
(669 letters)
>mm_chr10_123852985_123854051
Length = 1067
Score = 1239 bits (641), Expect = 0.0
Identities = 659/665 (99%), Gaps = 2/665 (0%)
Strand = Plus / Minus
Query: 5 gaattctatttcactgcctggcattgtgccaggtgctggcattctgatgtcctttgaata 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattctatttcactgcttggcattgtgccaggtgctggcattctgatgtcctttgaata 808
Query: 65 tagctcagcttaaatgcatgttatttagtgttttatggatataaattattctagtcatta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tagctcagcttaaatgcatgttatttagtgttttatggatataaattattctagtcatta 748
Query: 125 cactttggaacacagcctaaaggatgtttcccgtaagttaagcggcctcgcacttgtaat 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 747 cactttggaacacagcctaaaggatgttt-ccgtaagttaagcggcctcgcacttgtaat 689
Query: 185 agcctgtaaacgaaaccaaatctcagcattacgaaaggcactcactgctttaaaataaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agcctgtaaacgaaaccaaatctcagcattacgaaaggcactcactgctttaaaataaag 629
Query: 245 tgggttttcctgacataccataaatatccatagaaagaagaaaatacattttctgtacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgggttttcctgacataccataaatatccatagaaagaagaaaatacattttctgtacat 569
Query: 305 atttagtgatatgtccttgtcctttacatcataaaatgctgatacttttgtagcatgtac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 568 atttagtgatatgtccttgtcctttacatcataaaatgctgatacttttgtagaatgtac 509
Query: 365 tatatgtcatctgagcatttccacatctgtgcattatgtggagaaatacattatgcaagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatatgtcatctgagcatttccacatctgtgcattatgtggagaaatacattatgcaagt 449
Query: 425 aaatgatgcttagtgatagacaggaaatcagagctgagagttttacatatatacatgata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatgatgcttagtgatagacaggaaatcagagctgagagttttacatatatacatgata 389
Query: 485 tgtaaattttaaacaaataatgcatttctctctctttgtaataactaaacaaatttatct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtaaattttaaacaaataatgcatttctctctctttgtaataactaaacaaatttatct 329
Query: 545 tgatttttttcaaacaaatgcaaaatatgaataggatacaacttatcagctccattaata 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tga-ttttttcaaacaaatgcaaaatatgaataggatacaacttatcagctccattaata 270
Query: 605 aatagcatctagctttcttgcctcttgcttacttttgcttccctcaaacctcttgggctc 664
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 269 aatagcatctagctttcttacctcttgcttactcttgcttccctcaaacctcttgggctc 210
Query: 665 ttacc 669
|||||
Sbjct: 209 ttacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1067
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1057
Effective search space: 696563
Effective search space used: 696563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_m09.g1 MSMg01no103_m09.g1 CHROMAT_FILE:
MSMg01no103_m09.g1 PHD_FILE: MSMg01no103_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:48 2005
(282 letters)
>mm_chr10_123769437_123770118
Length = 682
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%)
Strand = Plus / Plus
Query: 1 catctgcagaggagggcgttcccaggtgtcttgagcaacatttttctgctctgttctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgcagaggagggcgttcccaggtgtcttgagcaacatttttctgctctgttctgca 260
Query: 61 tgttcatttgattttctagtaagaagcttaaaatcaaaattggacagaacaaaatgccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcatttgattttctagtaagaagcttaaaatcaaaattggacagaacaaaatgccat 320
Query: 121 ttctctgccaacattttggtgcagtaacagaggggagacataaggggcctaaaacacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctgccaacattttggtgcagtaacagaggggagacataaggggcctaaaacacttt 380
Query: 181 gctgcttttcagctcacgaatggcgagaacaattcagaacagtcagctaaattctaattt 240
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 381 gctgcttttcagctcaggaatggtgagaacaattcagaacagtcagttaaattctaattt 440
Query: 241 tagattatcaatgattttccaaatcaggagccaggcatggca 282
||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tagattaacaatgattttccaaatcaggagccaggcatggca 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
