BAC Information

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BAC

Clone NameMSMg01-104I19
Chromosome10 (Build37)
Map Location 15,156,086 - 15,156,651
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104I19.T7 (MSMg01no104_i19.b1)MSMg01-104I19.TJ (MSMg01no104_i19.g1)
ACCAG319133AG319134
length705724
length of high quality
(start - end)
309 (72 - 380)564 (70 - 633)
definitionCHROMAT_FILE: MSMg01no104_i19.b1 PHD_FILE: MSMg01no104_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:51 2005CHROMAT_FILE: MSMg01no104_i19.g1 PHD_FILE: MSMg01no104_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGA
ATTCAAAGGCATTTCCCCACAAAGTTCTAAATTCTTCTATGTTGCTATTC
AGAAACTGAAAGCTTACAAGCTACCTGGTCAGATTTATCACAGCAACAGC
CCTGATTCTGGGTACAAATTTCTGTCATAGTTTCATTTCTGTTGCTGCAA
CAAAATACACCTACAAAAGGAACTAAATGGAAAAGAGTATTTTTTTCAGA
ATTTCAGATCATACCTTATTATAGCAGAAGGCAATGAATTCACAAAAGCA
TGAATTCATTGCTCTCTCCTGAAAATAGGTTAGCAATTTAACCAGCTGCT
TCAAACTCCTATTGCTGTGAATTTACTGTCATGGTAGATTATAGCCTTCA
CTGTGACAAAATGCAAACAGATTTTTTTTTTTTAAGCAACTAAATCAAAA
ATTTTGCGTATCATATGGAGATGCTTTCCATGCAGTAAGCACTTTACTAT
GCGTTGGCATCTTATTGGTGCCCGTTGCTCTATTCAAATATTCTTAAATT
CATTCCATGAACAATAAATTTCCTATTAACAGTGCACAATCCCCCTTTCC
TTATTGACTATCCTCCCTATTAACACTTTCAATGCCATCTCCTTTTTCAG
TCCCCCTTCCTCTGATATTTTCATAATCCACATACCCTTTCCCTTGTTCT
TATAG
TTATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTCAAAGAACCAAGGGAAGTGATAATATT
TCATAAAGAAATTAAAGATAGATTAATCTTTGAGTCTCTTAAAATTTATA
TAGAAAATATTATTGACCTCAAAATAAAATTAAATTGTTTATAGTCCTGT
GTGATATGTTACAGTTTCAATTTGTGAATCTTAAGAATATAGAGAATAAA
ATTGGAAGCATCCTTTAGGAGAGATTAGTTATTATGTTCATTCAACAATG
GTATATATTAAATGTTGTAGTTGGTTCTTATGATGCATATCTCAGGGCTA
TGGAGATAACTCTTTTGTTTTGGTCAGTTGAGGACCTGGGCTTGCATCAT
CAGCATCCTCTGTCACAGCTGTACAGTAATGGGTCCCTCCATGTGTACTC
TTTGGTTGATGATTTAGTTCTTGGGTGCTCAGGGGCACTGGCTGGTTCAT
ATTGCTGTTTCTTAAATGGGGCTGCAAGCTCCTTCAGCTCCTTCAGCTCC
TTCAGCTCCTTCAGCTCCTTCTTCTGTCCTTTCTCTTGTTCTTCCATTGG
GGACCTTGTTCTCAGTCCAATGATGTTTGACTGAGAGCATCCACCTCTGT
CTTTGTCAGGCACTGGCAGAGCCTCTTAGGACACAGCTATATCAGGCTCT
TGTCAGCAAGCACTTTTTGGCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_i19.g1 MSMg01no104_i19.g1 CHROMAT_FILE:
MSMg01no104_i19.g1 PHD_FILE: MSMg01no104_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:51 2005
         (564 letters)



>mm_chr10_15155886_15156845
          Length = 960

 Score =  922 bits (477), Expect = 0.0
 Identities = 542/579 (93%), Gaps = 28/579 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcaaagaaccaagggaagtgataatatttcataaagaaattaaagatagattaatct 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||    || ||
Sbjct: 201 atttcaaagaaccaagggaagtgataatatttcataaataaattaaagata----aacct 256

                                                                       
Query: 61  ttgagtctcttaaaatttatatagaaaatattattgacctcaaaataaaattaaattgtt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 257 ttgagtctcttaaaatttatatagaaaatattgttgacctcaaaataaaattaaattgtt 316

                                                                       
Query: 121 tatagtcctgtgtgatatgttacagtttcaatttgtgaatcttaagaatatagagaataa 180
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 317 tatagtcctgtgtgacatgttacagtttcaatttatgaatcttaagaatatagagaataa 376

                                                                       
Query: 181 aattggaagcatcctttaggagagattagttattatgttcattcaacaatggtatatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aattggaagcatcctttaggagagattagttattatgttcattcaacaatggtatatatt 436

                                                                       
Query: 241 aaatgttgtagttggttcttatgatgcatatctcagggctatggagataactc------- 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 437 aaatgttgtagttggttcttatgatgcatatctcagggctatggagataactcagtgggt 496

                                                                       
Query: 294 ------ttttgttttggtcagttgaggacctgggcttgcatcatcagcatcctctgtcac 347
                 |||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 497 aaactcttttgttttggtcagttgaggacctgggtttgcatcatcagcatcctctgtcag 556

                                                                       
Query: 348 agctgt--acagtaatgggtccctccatgtgtactctttggttgatgatttagttcttgg 405
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agctgtgtacagtaatgggtccctccatgtgtactctttggttgatgatttagttcttgg 616

                                                                       
Query: 406 gtgctcaggggcactggctggttcatattgctgtttcttaaatggggctgcaagctcctt 465
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |
Sbjct: 617 gtgctcaggggcactggttggttcatattgctgtttcttaaatggggctgcaagct---t 673

                                                                       
Query: 466 cagctccttcagctccttcagctccttcagctccttcttctgtcctttctcttgttcttc 525
           |      ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 674 c------ttcagctccttcagctccttcagctccttcttctgtcctttctcttgctcttc 727

                                                  
Query: 526 cattggggaccttgttctcagtccaatgatgtttgactg 564
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cattggggaccttgttctcagtccaatgatgtttgactg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 960
Length adjustment: 10
Effective length of query: 554
Effective length of database: 950
Effective search space:   526300
Effective search space used:   526300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)