BAC Information

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BAC

Clone NameMSMg01-105H18
Chromosome10 (Build37)
Map Location 41,345,498 - 41,345,793
singlet/doubletsinglet
Overlap geneEG629461
Upstream geneDdo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik
Downstream gene2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105H18.T7 (MSMg01no105_h18.b1)MSMg01-105H18.TJ (MSMg01no105_h18.g1)
ACCAG319827AG319828
length713834
length of high quality
(start - end)
337 (69 - 405)---
definitionCHROMAT_FILE: MSMg01no105_h18.b1 PHD_FILE: MSMg01no105_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:08 2005CHROMAT_FILE: MSMg01no105_h18.g1 PHD_FILE: MSMg01no105_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCATGCGCTATACGACTCCTATATCCAGAGGATGGGCGGAATTCA
GCTTTATTGCCTGGAACAGGTCGCTGTCCTACATGTGCCTTATGTTATTT
TAGAGTGTTTTTGATGTCTACTGGAGAGACACCAGCGTGCAGTCACTCTC
TGTCCTCCTCTTCTTCCTCTCCTCCTCTTTTTCCTCCTCCTCTTCTTCCT
CTTTTTCCTTCTCCTCTTTATTCTCCTTCTCTTCCTCCTCCTCCTCCTCT
CCTCTTTTCCTCCTTCTCCTCTTCTTCCTCTTTTTCCTTCTCTTTATTCT
CTTTCTCCTCCTCCTCTCTAGCCTCCTCCCTTTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCCTCCCCCCCCCCTCTTCTCTTCCTCAACCTTCCCACCCC
TTTGTTTGTTTCTGACCATTGTTGATTCCTCCTGATGTTGCCAAATAGTT
CCTTGGGGGCAAATTTCTCTGGTCCTATTTCACCTAATACTTATGATGAC
CTTTCCAGTGCTGGATGTACGTCACTTTTCTCATGCGAGGCCTGTTGTTC
CTCTGCCACTGGGAGTCTGGCTGTATTTACGGCTTTTGTACAGTTGCTTT
TCTTCCGCTTTGATTTTTTGACCTCCTTCTCCTGTCTTTAGTCGCCCGAT
ATCTTTGTGCCCCGGCTCATTGGCGCTTTGACCTTCTCGCGTTGCCCGTT
TTTCTCCAGTCCT
CTTTTCTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGTAATTCAGATAAGACAACT
GTGTGATAATATCTAGCTAGAGACGAGAGTCTTATTATACGCCCTACCCT
GTCATACTGTGAGATGTTTATTAAAGTGGTAGCTTTTGTCTTAACTGGCA
CTGGTAGATGTATCTTGAGTTGAGTAGTATAGTCTGCTTCGCCTAGCATG
CTATGACTCTGTGCTATTAATCCTCTCACGCCATGATCACACTGTTTCAT
GGTTGGATCCTTGCTTGTTAATCCCAGCCACTGCTTGATACTATGATACA
GCCATGTACTCATGGATTCTTTTGGTTCAACCTTCAGATATGTACCAATT
TGCACGCTTTTCTTGACTCTACTCAGATACTGCTCCCTACCTGTCCTCTT
GTTTCCAACCCCACATCACTTACCTGCCTCTTTACCTCTAATGTCCATGA
TCCTTCTTTCACAAAACCCCTTTGCACTTGTAAATATCTCTCTCTAACTT
GAATCACGCCGTCCATTATATGTTTATTATCTGACTACCTAACATTGTAC
GTTTTACTCGTTCCCTCTCCTCATACCTATACTACTATATTCACTTCTCC
CCCCCCACTACCGTATTACTTTTACCCTTCTACATATATCCTAACCCCTC
TTTACTCGCCTGTTACGCTCTTCTCCAATTCTCAATCCCATACCTATTTA
TGCTATTAATCCCGCCATTCACCAAATAGCCTCATATCGGCCCCCCCTGC
ATCCCTTCATGCATCCTAACCCCCACCCTACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_h18.b1 MSMg01no105_h18.b1 CHROMAT_FILE:
MSMg01no105_h18.b1 PHD_FILE: MSMg01no105_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:08 2005
         (337 letters)



>mm_chr10_41345495_41346229
          Length = 735

 Score =  484 bits (250), Expect = e-141
 Identities = 286/304 (94%), Gaps = 15/304 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcgctgtcctacatgtgccttatgttattttag-agtgtttttgatgtctactggaga 59
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 299 ggtcgctgtcctacatgtgccttatgtta-tttagcagtgtttttgatgtctactggaga 241

                                                                       
Query: 60  gacaccagcgtgcagtcactctctgtcctcctcttcttcctctcctcctctttttcctcc 119
           |||||||||| |||||| |||    ||||||||  | |||||||||||||||||||||||
Sbjct: 240 gacaccagcgggcagtcgctc----tcctcctc--c-tcctctcctcctctttttcctcc 188

                                                                       
Query: 120 tcctcttcttcctctttttccttctcctctttattctccttctct------tcctcctcc 173
           |||||||||||||||||||||||||||||||||||||||||||||      |||||||||
Sbjct: 187 tcctcttcttcctctttttccttctcctctttattctccttctcttcctcctcctcctcc 128

                                                                       
Query: 174 tcctcctctcctcttttcctccttctcctcttcttcctctttttccttctctttattctc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcctcctctcctcttttcctccttctcctcttcttcctctttttccttctctttattctc 68

                                                                       
Query: 234 tttctcctcctcctctctagcctcctccctttccttctcctcctcctcctcctcctcctc 293
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 67  tttctcctcctcctctctagcctcctccctttcctcctcctcctcctcctcctcctcctc 8

               
Query: 294 ctcc 297
           ||||
Sbjct: 7   ctcc 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 735
Length adjustment: 9
Effective length of query: 328
Effective length of database: 726
Effective search space:   238128
Effective search space used:   238128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)