BAC Information

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BAC

Clone NameMSMg01-105O12
Chromosome10 (Build37)
Map Location 85,338,454 - 85,338,845
singlet/doubletsinglet
Overlap genePwp1
Upstream geneRfx4, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940
Downstream genePrdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105O12.T7 (MSMg01no105_o12.b1)MSMg01-105O12.TJ (MSMg01no105_o12.g1)
ACCAG320136AG320137
length701693
length of high quality
(start - end)
395 (75 - 469)333 (126 - 458)
definitionCHROMAT_FILE: MSMg01no105_o12.b1 PHD_FILE: MSMg01no105_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:41 2005CHROMAT_FILE: MSMg01no105_o12.g1 PHD_FILE: MSMg01no105_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCGC
GGAATTCCTAAATCTTGCCCGACACAATCTCTGAATGAAAGAACTAAGTC
AAGAATGTAACCCTTTTAGGAAGCATTCCAGCTCTGTTCAGATTTTCTAC
CTTGTTTAAAATACAACTAGAAGTCAAGGTGCTGGAGAGGCAGCTGTGAG
TAATTTGAAGAATGTGTTCCCGAGATCAGCAAACCAGGTTGTTAGGTAAA
CACTTAGACGGCAGGCTTCACAGCCGGCCAGACTGCTATGCAGGCAGCGC
TCTCACACTTACAAGCGTAGGTTTCACAAATCCCAAAAGGGAATCTTTAT
ACTGCCTTTGCAAGGGAGTGCTGAGCGAACCTAGGGCAGCAGCCATGGTT
CGGATCTGATGGACCTAGGGCAGCCGCCATGGTTTGGACCTGACATTGCC
CTTTGAAGGCTCTTGTGCTAGGCAATGGGTGGCCAGATGACAATCTCTGA
GTTCTGACCTAAACAATGGACTTATAATATGATGGCATTATTTCCATCAG
GTGGAGGGCAGATGGTACGGCCAAAATGGAAGGCTAACCAATTCCTAGCT
CCTATGAAAAGCACCGGACTCTTCAGTGCCAACAGCCCAACAGTTCTGTA
TTCCCCTCCCTTACTGGCGTGGGTCAGTAAAGCTTGACTATGGTACAGAT
C
CCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCGATGTAGTTCACTCATCATTCTGA
GTCTTTTTGGGTCACTCCAGCTCCGGTGGGGAGTCCCATGAAGGACCTTG
TATCACATACAAGATTTAGTTAGGGTTACTATTGTGGCAACAAAACACCA
TGACTAAAAAGCAAGTTCAGAAGGAAAAGGTTATCAGTTTATACTTCCAC
ATTGCTGTTCATCACTAAAAGAAGTCAGGACAGGAGTTCAAACAGGGCAG
GAATCTGGAGGCAGGAGCTGATGCTTAGGCCATAAAGGGATGCTGCTTAC
TGGTTTGCTTCCAATGGCTTTGTTCAGCTTGCTTTCTTATAGAACCCAGG
ATCATCAGCCCAGGAATGGCACCACCCACCATGAACTGGGCCCTCCCCCA
TTGATCACTGATTGAGAAAATGCTTCACAACTGTATCTCATGGAAGCATT
TCCTCAACTGAGGCTCCTTCCTCTCTGATGACTCAAGCTTGTGCCAAGTT
GACTTTAACCCTTCCAGTACATGGACCTAACCCTGCTATGTGTAGACAAA
GGGTTCAAACGATGGCCCTTCAAATAATCCAGGGTCTGCTTTTCGAATCC
AGCTCTTCTGCCTACTTTGATCCTCAGATAATGTGTTGTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_o12.b1 MSMg01no105_o12.b1 CHROMAT_FILE:
MSMg01no105_o12.b1 PHD_FILE: MSMg01no105_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:41 2005
         (395 letters)



>mm_chr10_85338254_85339045
          Length = 792

 Score =  733 bits (379), Expect = 0.0
 Identities = 390/395 (98%), Gaps = 3/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatctctgaatgaaagaactaagtcaagaatgtaacccttttaggaagcattccagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caatctctgaatgaaagaactaagtcaagaatgtaacccttttaggaagcattccagctc 533

                                                                       
Query: 61  tgttcagattttctaccttgtttaaaatacaactagaagtcaaggtgctggagaggcagc 120
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 532 tgttcagattttctaccttgttt---atacaactagaagtcaaggtgctggagaggcagc 476

                                                                       
Query: 121 tgtgagtaatttgaagaatgtgttcccgagatcagcaaaccaggttgttaggtaaacact 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtgagtaatttgaagaatatgttcccgagatcagcaaaccaggttgttaggtaaacact 416

                                                                       
Query: 181 tagacggcaggcttcacagccggccagactgctatgcaggcagcgctctcacacttacaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 415 tagacggcaggcttcacagccggccaggctgctatgcaggcagcgctctcacacttacaa 356

                                                                       
Query: 241 gcgtaggtttcacaaatcccaaaagggaatctttatactgcctttgcaagggagtgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcgtaggtttcacaaatcccaaaagggaatctttatactgcctttgcaagggagtgctga 296

                                                                       
Query: 301 gcgaacctagggcagcagccatggttcggatctgatggacctagggcagccgccatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gcgaacctagggcagcagccatggttcggatctgatggacctagggcagccgccatggtt 236

                                              
Query: 361 tggacctgacattgccctttgaaggctcttgtgct 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tggacctgacattgccctttgaaggctcttgtgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 792
Length adjustment: 9
Effective length of query: 386
Effective length of database: 783
Effective search space:   302238
Effective search space used:   302238
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)