Query= MSMg01no106_i04.b1 MSMg01no106_i04.b1 CHROMAT_FILE:
MSMg01no106_i04.b1 PHD_FILE: MSMg01no106_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:03 2005
(554 letters)
>mm_chr10_87464397_87465348
Length = 952
Score = 843 bits (436), Expect = 0.0
Identities = 516/556 (92%), Gaps = 24/556 (4%)
Strand = Plus / Minus
Query: 1 aaaaaagag--aaaaacaaaaacattgcccccacccccggatttgtttttgggttttttt 58
||||||||| ||||||||||||| ||||| |||||| ||||
Sbjct: 816 aaaaaagagaaaaaaacaaaaaca---cccccccccccg-----------------tttt 777
Query: 59 tttttttttttttttttttgctggggcttacagatacaccataacagaaaacctcaactt 118
||| ||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 776 tttgtttgtttgtttttttgccgtggcttacagatacaccataacaaaaaacctcaactt 717
Query: 119 ttagatgcatcatgatgcatctgggttatgaaatgttttatcataaggtattataaataa 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 716 ttagatgcatcatgatgcatctgggttatgaaatgttttataataaggtattataaataa 657
Query: 179 tgatctgcttgaatgcaaagaaaatatcttaagaagattttatgtgtacaagaaagacac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 656 tgatctgcttgaatgcaaagaaaatatcttaagaagattttatgtgtacaagagagacac 597
Query: 239 tcctaacttgctcttgttcgaagaatcaaagctgctgaaaacacaccctggaacacttac 298
|||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 596 tcctaacttgctcttgctcgaagaatcagagttgctgaagacacaccctggaacacttac 537
Query: 299 atttttgaaaggataaaatgtaactcctaaagaaaaaaaaatcctagacattaaacaatg 358
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 536 atttttgaaaggataaaatgtaactccaaaagaaaaaaa--tcctagacattaaacaatg 479
Query: 359 tttattccaacttggttttcatgacaagtatgaagcattgtttcatctctttcaaaatta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttattccaacttggttttcatgacaagtatgaagcattgtttcatctctttcaaaatta 419
Query: 419 attcctgatttttctagctaactctgagttatttgtgccaatggattattgattgaataa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attcctgatttttctagctaactctgagttatttgtgccaatggattattgattgaataa 359
Query: 479 aagctcttcctatactgacaacagtggggtcttcttaatgtctctaaacatttacttaaa 538
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 358 aagctcttcctttactgacaacagtgtggtcttcttaatgtctctaaacatttacttaaa 299
Query: 539 aatgttcctttattgt 554
||||||||||||||||
Sbjct: 298 aatgttcctttattgt 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space: 512448
Effective search space used: 512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_i04.g1 MSMg01no106_i04.g1 CHROMAT_FILE:
MSMg01no106_i04.g1 PHD_FILE: MSMg01no106_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:03 2005
(451 letters)
>mm_chr10_87316440_87317290
Length = 851
Score = 849 bits (439), Expect = 0.0
Identities = 448/451 (99%), Gaps = 1/451 (0%)
Strand = Plus / Plus
Query: 1 tgtccctttgttagtaaagggagaagcaagatgggggggaggtgttcaaaacaaccaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtccctttgttagtaaagggagaagcaagatgggggggaggtgttcaaaacaaccaggg 260
Query: 61 tcagattgaaactttcttcttggtagattcgggatagaaagagggttaaaaatggaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagattgaaactttcttcttggtagattcgggatagaaagagggttaaaaatggaatca 320
Query: 121 cgtctgtatttagtgagtctttgactgcaggtgttctaacccacattttgaaaaccgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtctgtatttagtgagtctttgactgcaggtgttctaacccacattttgaaaaccgagg 380
Query: 181 tgtcagaaactatgaggagtacacaagactgaatcaagctccactcgggagcatctaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagaaactatgaggagtacacaagactgaatcaagctccactcgggagcatctaaat 440
Query: 241 ttaggtttcatgtaatacatcatttttccatccagcgatccttacaccccgtgtcatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggtttcatgtaatacatcatttttccatccagcgatccttacaccccgtgtcatttt 500
Query: 301 ttttttttttttgtattaataaaatgagaaacctggcccttttactcagtggctttatgc 360
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttttttttttt-gtattaataaaatgagaaacctggccattttactcagtggctttatgc 559
Query: 361 tgttaaaaaatattttacttttgctatcatttatcctttgtactctgattcgtttaacgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgttaaaaaatattttacttttgctatcatttatcctttgtactctgattcgtttaacgc 619
Query: 421 tgtgctttaagctcataccaggagactagac 451
|||| ||||||||||||||||||||||||||
Sbjct: 620 tgtgttttaagctcataccaggagactagac 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
