BAC Information

Click to search

BAC

Clone NameMSMg01-106O15
Chromosome10 (Build37)
Map Location 32,843,679 - 32,844,100
singlet/doubletsinglet
Overlap geneTrdn
Upstream geneTcba1, EG667761
Downstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106O15.T7 (MSMg01no106_o15.b1)MSMg01-106O15.TJ (MSMg01no106_o15.g1)
ACCAG320871AG320872
length7101,885
length of high quality
(start - end)
376 (58 - 433)564 (114 - 677)
definitionCHROMAT_FILE: MSMg01no106_o15.b1 PHD_FILE: MSMg01no106_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:01 2005CHROMAT_FILE: MSMg01no106_o15.g1 PHD_FILE: MSMg01no106_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACACCCGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAAGGCCCACACCTGAACATGATAAAAACAATCT
ACAGCAAACCAATAGCCAACATCAAAGCAAATGTTGAGAAGCTGGAAGCA
ATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCGCCCTACCT
ATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGG
AGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTT
GCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGA
ACTCCTAAGCCTGATAAACAGCTTCAATGAAGTAGCCAGATATAAAATTA
ACTCAAACAAGTCAATGGTCTTTCTGCACACAAAGTATAAACAGGCTGAG
AAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATACA
ACACCTTGGCGCGACTAACTAACGAAGTGAAAGATCTGTACGATAACAAC
TTCTTGTCTCTACATAAAGAAATTACAGATGATCTCCGAACATGGAAAGA
GCTCCCATGCCTCTGCATTCCCCCGATCAACATTGCCCAACGTCTATCTT
GCCTAATGTATCTACCGACCCCATGCAATCCCTATCTAAATTCCACATCT
CATCCTTCAG
NAAAACACTTTTTTTTNAGGAAAGCGTCGGCCGCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAACTCATTTTTGTCTANTA
CTCCTCTTTGAGACACACAGAACAATTTATTTATATTAATGAATAAGCCT
TTGCCCAAGATCTGTGAGACTTAATGTAATCAAATTTAAATATTAAAGAC
ACTATAATTTTCATAGTAATTTTAATTAAAATTAGGTGTTAAATGTTTTA
TATTTTCCTAGCCATGCAGGCAAAATACAATTTCATAATTTTAGATAATA
AAATTTCTACCACTGGGGCTGGAAAAATGGCTCAGTGGTTAAGAACCCTG
ACTGCTGTTCCAGAGGTCCTGAGTTCAAGTCCCAGAAATCACATGGTGGC
TCACAGCTATCTGTAATGAGATCCTATGCCCTCTTCTGGAGTGTCTGAAG
ACAGCTACTGTGTACTTATTAAAATAAATAAATCTTAAAAAACAAAACAA
AACAAAACTTTTTTCTACCAGTGGAAAATTAAGTAATATGGCCCACAGTT
AACCAATGATGAAAAATAATCTCAAATATCTATGAATACTATCTAAAGAC
CCATTCCTGCTTGCAAAAAATTACTGTAGAGAGAATCTTTATGTACTGTG
TAGAAGCATCACCTGTCAATAATAAGCTTTTGGCGTCTGAGCTGAGGCAT
GATTAGAAATTGAAACATTCAGCATAGAGAGAGAGAGAGAGAGAGATAGA
TAGAGAGAGAGAGCAGAATTCTGATAGTCCGAGGTGAGAAATTTGTTACC
CAAACACTGAAAAATAATCAGTCCAAGACTAAAGGAAAGGTAACTACCAA
TCACGTTGCTGAACTCAAATTCAAGTAATGCGGTTATATAGTTATGGACT
TATCCGGAAATGATCCTAAATTTATGGCCCCGAACTTTGCCCATAAAAAA
TATAGTTTTAAAACTATTACCCGGGGAAAAAAAAGTTGTGGTAAAATATC
TGATTTTTCAATTACACCTTCCAAAAGGCGTGAATTTTAACTCCTCTTCC
CTGTTTGAGGAAGGAACCCCCTTCCTTCTCCAAAATTTTACCCTTAAATG
TCCTGTCTTATTGAATTCCTGCTCTAAATTGGGACACTTTCTTAAATAAA
TATCTCTAGAAATACCCCCCCCATGTATTTTCCTATTTGTAACTCTATTC
CACATTTTTTGTTATCCAATAATTTTTTTTCATTTACTCATACTCATTTT
CTGATAACACTAATCATCCTCTCTATATATCTTCTACCTCCTTTATTATT
TTTCCTTTTGTTAATTTCAACTTAATTTTCTCATATTCTATCTTTTTTTA
TACATTCCTTCTTCTGAATTCTATCTCTTATCTATCTTTATTTAACCTTA
TTTCTTTCAAAATTATATAATATTTCCTCACTAAATTTCCTCTTTCTTTC
TTCTTATATTATATATCTTTTACTTTTCTATAGATTTCTTATTATATCTT
ATATCATTTTTACTTACTTTCTTTTCTCTTTCATATTTCTCCTACTATCC
TATTCTTAATTTCTTNTCTTAACTTATTCTTATATTTTTCATAATATTCT
ATTTATATTTTCTTTATATATCNCTNACCTTTATCTTTAATTCTCTCTGT
ACTTCTTCACNTCTTTCTTGATTATTCATATATCTTCTCCTTATACTTCT
ATCCTACATCTACTACTTTATATCATCATATATACACTTATCACTCACAC
ATATTATCTTGCCTATCTACTCTTTGCTACTTATATTCTTCATGTCTATC
TGATTATTCTCATCTCTTGTCCTCCTACTATTCTTNTTATATCTCATCAT
ATTACCACATTCTCTCTCTCCATTATAGTTACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_o15.g1 MSMg01no106_o15.g1 CHROMAT_FILE:
MSMg01no106_o15.g1 PHD_FILE: MSMg01no106_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:01 2005
         (564 letters)



>mm_chr10_32843137_32844100
          Length = 964

 Score =  762 bits (394), Expect = 0.0
 Identities = 415/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 143 tcctagccatgcaggcaaaatacaatttcataattttagataataaaatttctaccactg 202
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 964 tcctagccatgcaggcaaaaaacaatttcataattttagataataaaatttctaccacta 905

                                                                       
Query: 203 gggctggaaaaatggctcagtggttaagaaccctgactgctgttccagaggtcctgagtt 262
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 904 gggctggaaaaatggctcagtggttaagaaccctgactgatgttccagaggtcctgagtt 845

                                                                       
Query: 263 caagtcccagaaatcacatggtggctcacagctatctgtaatgagatcctatgccctctt 322
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 844 caattcccagaaatcacatggtggctcacagctatctgtaatgggatcctatgccctctt 785

                                                                       
Query: 323 ctggagtgtctgaagacagctactgtgtacttattaaaataaataaatcttaaaaaacaa 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 784 ctggagtgtctgaagacagctactgtgtacttattaaaataaataaatcttaaaacacaa 725

                                                                       
Query: 383 aacaaaacaaaacttttttctaccagtggaaaattaagtaatatggcccacagttaacca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aacaaaacaaaacttttttctaccagtggaaaattaagtaatatggcccacagttaacca 665

                                                                       
Query: 443 atgatgaaaaataatctcaaatatctatgaatactatctaaagacccattcctgcttgca 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atgatgaaaaataatctcaaatatctatgaatactatctaaagacccattcctgcttgca 605

                                                                       
Query: 503 aaaaattactgtagagagaatctttatgtactgtgtagaagcatcacctgtcaataataa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 604 aaaaattactgtagagagaatctttatgtactgtgtagaagcatcacctgtcaataaaaa 545

             
Query: 563 gc 564
           ||
Sbjct: 544 gc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)