Query= MSMg01no107_d15.b1 MSMg01no107_d15.b1 CHROMAT_FILE:
MSMg01no107_d15.b1 PHD_FILE: MSMg01no107_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:48 2005
(495 letters)
>mm_chr10_76611604_76612498
Length = 895
Score = 799 bits (413), Expect = 0.0
Identities = 468/497 (94%), Gaps = 22/497 (4%)
Strand = Plus / Minus
Query: 1 tgtgtttctcaaagaagcaaccgaaccagggcccat---acaaaaccctcaggccctaag 57
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 619 tgtgtttctcaaagaagcaaccgaactaggg----tgaaacaaaaccctcaggccctaag 564
Query: 58 gttccaggaactgctgtcccaagatgcttgtcttcagtacctgctgctccggtggggttt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttccaggaactgctgtcccaagatgcttgtcttcagtacctgctgctccggtggggttt 504
Query: 118 ctttgttaagcgtgtaggtgcacatgtgtgcatgggtgtgtacgtgtgcagatgctcatg 177
|||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 503 ctttgttaagcgtgtaggtg--catgggtgca--------tacgtgtgcagatgctcatg 454
Query: 178 aatgtgcctgtcagaccagaagtccacctcaggggtcatttcttcaggtgcctcccacct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatgtgcctgtcagaccagaagtccacctcaggggtcatttcttcaggtgcctcccacct 394
Query: 238 tctttttcatttctgatttttctgtttgtttctgtgtttttttttaaag----atttatt 293
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 393 tctttttcatttctgatttttctgtttgtttctgtggttttttttaaagatttatttatt 334
Query: 294 tatttatttatttagtatgagtacaccattgctctcttcaaacacaccagaagagggcat 353
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 333 tatttatttatttagtatgagtacaccactgctctcttcaaacacaccagaagagggcat 274
Query: 354 cagattccattacagatggttgtgagccaccatgtggtttctgggaattgaactcaggac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cagattccattacagatggttgtgagccaccatgtggtttctgggaattgaactcaggac 214
Query: 414 ctgaaccatctttccatcccatttgtttcgttttattgtttttgtttttgttgttgttgt 473
|||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 213 ctgagccatctctccatcccatttgtttcgttttactgtttttgtttttgttgttgttgt 154
Query: 474 tgtt-ttgttttgtttt 489
|||| ||||||||||||
Sbjct: 153 tgttgttgttttgtttt 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_d15.g1 MSMg01no107_d15.g1 CHROMAT_FILE:
MSMg01no107_d15.g1 PHD_FILE: MSMg01no107_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:48 2005
(608 letters)
>mm_chr10_76517258_76518265
Length = 1008
Score = 1129 bits (584), Expect = 0.0
Identities = 602/608 (99%)
Strand = Plus / Plus
Query: 1 agaccaaggcctgggtacaaatggagacagacttttggccttccagaaccttcaggacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccaaggcctgggtacaaatggagacagacttttggccttccagaaccttcaggacag 260
Query: 61 gtttcacctaccttcaggttgacgatgggcacagacccccggtcagcacggcgcacgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcacctaccttcaggttgacgatgggcacagacccccggtcagcacggcgcacgatg 320
Query: 121 ctatagagatcttgcagcctagaggacaggaaagcccggaaggtgcccgacagccccacg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatagagatcctgcagcctagaggacaggaaagcccggaaggtgcccgacagccccacg 380
Query: 181 gctcgggcttgctggaagcactggaaatctgctccacggataccacgcatgcctccagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcgggcttgctggaagcactggaaatctgctccacggataccacgcatgcctccagac 440
Query: 241 aggggggtgttcagtgccaccaggtggagctgccggaaaggtcatgaatggtcacatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggggtgttcagtgccaccaggtggagctgccggaaaggtcatgaatggtcacatcat 500
Query: 301 aagcagcgtcgcaagaaaacctcttgtctgtggcctacacacccacagcaaagcgcacat 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcagcgtcgcaagaaaacctctagtctgtggcctacacacccacagcaaagcgcacat 560
Query: 361 aggcagagtccacggagggatgagaccagtcactttagtgacaaccttcaagcaaccctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagagtccacggagggatgagaccagtcactttagtgacaaccttcaagcaaccctg 620
Query: 421 tcctgggctctctcagcctagagcatcaaagaagagtctcaggcacggtgatcccagcag 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgggctctcttagcctagagcatcaaagaagagtctcaggcacggtgatcccagcag 680
Query: 481 acccccaagatagcccctgatatcccttttcctgtgagcagagacaggggcaagctcagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 acccccaagatagcccctgatatcccttttcctgtgagcagagacaggggccagctcagg 740
Query: 541 ctgttccaccctggctgtagagtaggtactctccatccctggctgccccaccctctgtag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 ctgttccaccctggctgtagagtaggtactctccatccctggctgccccaccctccgtag 800
Query: 601 gacagagg 608
||||||||
Sbjct: 801 gacagagg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
