Query= MSMg01no108_a04.b1 MSMg01no108_a04.b1 CHROMAT_FILE:
MSMg01no108_a04.b1 PHD_FILE: MSMg01no108_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:42 2005
(560 letters)
>mm_chr10_43190401_43191360
Length = 960
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Minus
Query: 5 gaattccacactcatgcacctttgtctacacacagacacataattaaaaatgataaaagt 64
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattccatactcatgtacctttgtctacacacagacacataattaaaaatgataaaagt 254
Query: 65 aaatccttttaaaagacaaaatgcaatggtatataagtgttaaagctgttaatagtacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaatccttttaaaagacaaaatgcaatggtatataagtgttaaagctgttaatagtacat 194
Query: 125 gcatttaatcacagcagagggaggcagaggcagatgcatctgagtttgaggctagcctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gcatttaatcacagcagagggaggcagaggcagatgcatctgagtttgaggctagcctgg 134
Query: 185 tctacaaagtgagttccagggtagtcaaggctatacagagaaaccctgtcttgaatccac 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 133 tctacaaagtgagttccagggtagtcaaggctacacagagaaaccctgtcttgaatccac 74
Query: 245 ccccaaatgaatatatgcacacagatacatcaaacaaaataccttatagaaatgaagtca 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 73 ccccaaatgaatatatgcacacagatacatcaaacaaaataccttatagtaatgaagtca 14
Query: 305 agagctgggtttc 317
|||||||||||||
Sbjct: 13 agagctgggtttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_a04.g1 MSMg01no108_a04.g1 CHROMAT_FILE:
MSMg01no108_a04.g1 PHD_FILE: MSMg01no108_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:42 2005
(251 letters)
>mm_chr10_43054397_43055047
Length = 651
Score = 458 bits (237), Expect = e-133
Identities = 249/253 (98%), Gaps = 4/253 (1%)
Strand = Plus / Plus
Query: 1 cttttgttctgcctgctttcccttgtctagaggtggtggggaaagaaacagag-ataaac 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cttttgttctgcctgctttcccttgtctagaggtggtggggaaagaaacagagcataaac 260
Query: 60 a-gcaaaataccccatatgccaaacagaacgtgcatgatattagtgcttaaaatacagaa 118
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaaataccccatatgccaaacagaa-gtgcatgatattagtgcttaaaatacagaa 319
Query: 119 aacaaggtgagtgatgttgtgtgtacaaggcggcttgccatcagcagtggttgggagggc 178
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 aacaaggtgagtgatgttgtgtgtacaaggcgg-ttgccatcagcagtggttgggagggc 378
Query: 179 cttatagagaaggccattttggcctggagtgggtaaaccactaagcctcacaaataagta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttatagagaaggccattttggcctggagtgggtaaaccactaagcctcacaaataagta 438
Query: 239 aagaaatacagac 251
|||||||||||||
Sbjct: 439 aagaaatacagac 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
