Query= MSMg01no108_a18.b1 MSMg01no108_a18.b1 CHROMAT_FILE:
MSMg01no108_a18.b1 PHD_FILE: MSMg01no108_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:45 2005
(643 letters)
>mm_chr10_109602163_109603201
Length = 1039
Score = 1046 bits (541), Expect = 0.0
Identities = 617/643 (95%), Gaps = 8/643 (1%)
Strand = Plus / Minus
Query: 1 gtcccgttgatttgaaacactgtcttc-aaatcaaatcttactccgttctaaaatgtacg 59
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 837 gtcccgttgatttgaaacactgtcttcaaaatcaaatcttacgccgttctaaaatgtacg 778
Query: 60 tggtatggtattatcacttgcatagtcgagtcttctgtgacccacagactagccaatgtt 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tggtatggtattatcacttgcgtagtcgagtcttctgtgacccacagactagccaatgtt 718
Query: 120 gaagcaagtgtacaggggattaaattggatgcagcagtgtagagttacttgcctaagtta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaagcaagtgtacaggggattaaattggatgcagcagtgtagagttacttgcctaagtta 658
Query: 180 actcgttaagcaaagtctgtctttcacaagatctcactgtttgtatacagagttaagtac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actcgttaagcaaagtctgtctttcacaagatctcactgtttgtatacagagttaagtac 598
Query: 240 cgaagcaggaaccaagtggctagataccttttcaaagacaagttgctgcctaggtagatc 299
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 597 cgaagcaggaaccaagtggctagacaccttttcaaagacaagtcgctgcctaggtagatc 538
Query: 300 aaggctgtgaaataaacctcatcttcttatcagcattttataatcttaaattactgctca 359
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 537 taggctgtgaaataaacctcatcttcttatcagcattttataatcttaaactactgctca 478
Query: 360 gtgtgtgtagcttttgcttgctttcacttcttatgcctaacagagaagaaattgctgtga 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 477 gtgtgtgtagcttttgcttgctttcacttcttatgcctaacagagaagacattgctatga 418
Query: 420 gacactacataagcatttactcgctctgtgggcttcttgtagcatcctctgtgacttggc 479
||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 417 gacacgacataagcatttactggctttgtgggcttcttgtagcatcctctgtgacttggc 358
Query: 480 ttgacttgacatgcctcattttctatctgcattctacacctcttag-agacacttaggaa 538
|||| || | | ||||||||||| ||||| |||||||| |||||| || ||||||| |
Sbjct: 357 ttga--tg-c-t-cctcattttctgtctgcgttctacacttcttagaag-cacttagtta 304
Query: 539 aatggacactgatttccaagggtagattggacaagtctttaatttgatgaattattgaat 598
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aatggacactgatttcctagggtagattggacaagtctttaatttgatgaattattgaat 244
Query: 599 tttaaaaactttggattttggtcattttagtgtatagcctact 641
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 243 tttaaaaactttggattttggtcattttagcgtatagcctact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1039
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1029
Effective search space: 651357
Effective search space used: 651357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_a18.g1 MSMg01no108_a18.g1 CHROMAT_FILE:
MSMg01no108_a18.g1 PHD_FILE: MSMg01no108_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:45 2005
(622 letters)
>mm_chr10_109462111_109463132
Length = 1022
Score = 1172 bits (606), Expect = 0.0
Identities = 615/618 (99%)
Strand = Plus / Plus
Query: 1 ttctgacaaatggagattctacagatagttaaaagttacactcatacaagaaattatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgacaaatggagattctacagatagttaaaagttacactcatacaagaaattatcag 260
Query: 61 ggcccaggaaatagggggcttgtggtattgcagtattcatgagaaggtctgctagagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccaggaaatagggggcttgtggtattgcagtattcatgagaaggtctgctagagcag 320
Query: 121 aacccctgggggtgggcttaacaatagactagctttacacctggctcccttccttctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacccctgggggtgggcttaacaatagactagctttacacctggctcccttccttctttt 380
Query: 181 gatgtattccttttgtattgtgtcaatgtaacttgtaactcgcctggtttcttgttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtattccttttgtattgtgtcaatgtaacttgtaactcgcctggtttcttgttattc 440
Query: 241 ttctgtataaaaagtttgatgctggacttgacaaaataaattcagattctatacaatctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgtataaaaagtttgatgctggacttgacaaaataaattcagattctatacaatctc 500
Query: 301 ctgtgtgcatctgtctgtcattttcgccaactccttgcccatctgcacccagagacccgt 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ctgtgtgcatctgtctgtcattttcgccaactccttgcccatctgaacccagagacccgt 560
Query: 361 ccacgcagacaaagggacccagagggtctgcggcaaaagcagaacccaataggatttgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacgcagacaaagggacccagagggtctgcggcaaaagcagaacccaataggatttgaa 620
Query: 421 taccaatatacaccggaaaataccatgtagatgttcatagttaaagatgatactgaaata 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactaatatacaccggaaaataccatgtagatgttcatagttaaagatgatactgaaata 680
Query: 481 atggaaggtaggaattaaaaaaaaaaagataaattctatttaacagagagagataacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggaaggtaggaattaaaaaaaaaaagataaattctatttaacagagagagataacaaa 740
Query: 541 gaaccaagaagagaaattaacatttaatttattttgtacattatatctatgcattatttt 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 gaaccaagaagagaaattaacatttaatttattttgtaaattatatctatgcattatttt 800
Query: 601 atatacatatgcatgggg 618
||||||||||||||||||
Sbjct: 801 atatacatatgcatgggg 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
