BAC Information

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BAC

Clone NameMSMg01-108C08
Chromosome10 (Build37)
Map Location 93,038,133 - 93,204,094
singlet/doubletdoublet
Overlap geneCcdc38, Snrpf, LOC100041873, Ntn4, LOC667338
Upstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1
Downstream geneLOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108C08.T7 (MSMg01no108_c08.b1)MSMg01-108C08.TJ (MSMg01no108_c08.g1)
ACCAG321671AG321672
length689691
length of high quality
(start - end)		647 (43 - 689)612 (76 - 687)
definitionCHROMAT_FILE: MSMg01no108_c08.b1 PHD_FILE: MSMg01no108_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:54 2005CHROMAT_FILE: MSMg01no108_c08.g1 PHD_FILE: MSMg01no108_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,038,133 - 93,038,773)(93,203,483 - 93,204,094)
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCAATTCCGATGCTCAGGTACCTTCTTGGCCTGTGGTAACTTTATTTT
GTCTCCCGGTAATGATCTGGCCTCCCTGGGTGCTGAGCACTTGACACACG
GGGAGAGTTAGGGCAATCCATAAATTGTTGACGGGGTGTGGAAAACCAGT
GCGTGGAATTATTTTGTCAATATGGAAGAATCGTCCAGGGGGTTCACGTG
AAATGTTGTTCTAGTTATTTCAAATGGCCCTTCTTTGTTGCTATGTTGTG
TGTGATATAGTTTATTCGTTTTGATGGCAAATTCATGTGACCACTCAATG
ACAGAACATGTCATGAACCTACACACTTAATACTGCATGGAAAATTGGCC
CAAGCACAGAGCCTAGAATATGTGTCAACTTCTTTGGGCTTAAATAGATT
GGCTTGTCTCCCAGCACCCATGACACATCCTCACACCTTTATTTTACTGA
TAGGTTCACCTCTCCCAGCTGCATGCAGAGCCCTCCACACAAGGACCATC
CTAACTTCTTGTTAGTGAACTCAGTCCAGAGCTCCCTTAAGTGTCGATGC
TCAATAAATGTTTGTTGAATGAATGATCAGGTTAGTTTACAGATCCACAA
ACTCTAACAACCACTGGTTTCTTGGGAAAGCCTCATGGA

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGGATTTTACCCAGTGCTCAT
AAAGTACAAGGAGAGATGCTTTTATGGAGGTTTGGTTCGAAGGATATAAC
AGAAGACAGCCAATGTGCAGAGGTCACGGGATGGAAAGTCTAACCGGTCT
CACCTGGATTGAGGATTGGACAGGTGCAGCCTCTGTTAGTCCAGGACTCT
GGGTATAGCGTTCTCTTGCCTCGTAAGATCTTCAGTTTGGTGGACTTTAA
GACTTTCTTAATCTTCACATTGACTTCGGCATGGGAGCCTTTGTCGTGGG
CTGATAAGATCTTGATTTTTAACACTGTAACGACAGAATTCCAAACTTAA
AAAAAAAAGCATACAGATTTCATTTTTCTGTTGAAATTGTAACTATTTAA
AGTCATTTCCAAGTGTGAGGGAAGGGCGAATTGAGGAAAATCAGGATACA
GAAACCTGCTTTTAAGGTCATGAGGCTCATTCACCCTTGCAGTGATTTAA
TCTCATTTACATTTTATTTTCTCTTTATTGGGAAATTTCAACCTTTGCCC
CCTCCAGTATTATGACACTGGAAAGACATTAACCATCGCCTACTGCAAAT
ACAATTTTAAGTATATTCAGCTGAGCCAAGCATGGTAGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_c08.b1 MSMg01no108_c08.b1 CHROMAT_FILE:
MSMg01no108_c08.b1 PHD_FILE: MSMg01no108_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:54 2005
         (647 letters)



>mm_chr10_93037927_93038973
          Length = 1047

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaattccgatgctcaggtaccttcttggcctgtggtaactttattttgtctcccg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaattccgatgctcaggtaccttcttggcctgtggtaactttattttgtctcccg 266

                                                                       
Query: 67  gtaatgatctggcctccctgggtgctgagcacttgacacacggggagagttagggcaatc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtaatgatctggcctccctgggtgctgagcacttgacacacggggagagttagggcaatc 326

                                                                       
Query: 127 cataaattgttgacggggtgtggaaaaccagtgcgtggaattattttgtcaatatggaag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cataaattgttgacggggtgtggaaaaccagtgcgtggaattattttgtcaatatggaag 386

                                                                       
Query: 187 aatcgtccagggggttcacgtgaaatgttgttctagttatttcaaatggcccttctttgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatcgtccagggggttcacgtgaaatgttgttctagttatttcaaatggcccttctttgt 446

                                                                       
Query: 247 tgctatgttgtgtgtgatatagtttattcgttttgatggcaaattcatgtgaccactcaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgctatgttgtgtgtgatatagtttattcgttttgatggcaaattcatgtgaccactcaa 506

                                                                       
Query: 307 tgacagaacatgtcatgaacctacacacttaatactgcatggaaaattggcccaagcaca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgacagaacatgtcatgaacctacacacttaatactgcatggaaaattggcccaagcaca 566

                                                                       
Query: 367 gagcctagaatatgtgtcaacttctttgggcttaaatagattggcttgtctcccagcacc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagcctagaatatgtgtcaacttctttgggcttaaatagattggcttgtctcccagcacc 626

                                                                       
Query: 427 catgacacatcctcacacctttattttactgataggttcacctctcccagctgcatgcag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 catgacacatcctcacacctttattttactgataggttcacctctcccagctgcatgcag 686

                                                                       
Query: 487 agccctccacacaaggaccatcctaacttcttgttagtgaactcagtccagagctccctt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agccctccacacaaggaccatcctaacttcttgttagtgaactcagtccagagctccctt 746

                                                                       
Query: 547 aagtgtcgatgctcaataaatgtttgttgaatgaatgatcaggttagtttacagatccac 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagtgtcgatgctcaataaatgtttgttgaatgaatgatcaggttagtttacagatccac 806

                                                    
Query: 607 aaactctaacaaccactggtttcttgggaaagcctcatgga 647
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaactctaacaaccactggtttcttgggaaagcctcatgga 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_c08.g1 MSMg01no108_c08.g1 CHROMAT_FILE:
MSMg01no108_c08.g1 PHD_FILE: MSMg01no108_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:54 2005
         (612 letters)



>mm_chr10_93203283_93204294
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttggattttacccagtgctcataaagtacaaggagagatgcttttatggaggtttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cttttggattttacccagtgctcataaagtacaaggagagatgcttttatggaggtttgg 753

                                                                       
Query: 61  ttcgaaggatataacagaagacagccaatgtgcagaggtcacgggatggaaagtctaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttcgaaggatataacagaagacagccaatgtgcagaggtcacgggatggaaagtctaacc 693

                                                                       
Query: 121 ggtctcacctggattgaggattggacaggtgcagcctctgttagtccaggactctgggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggtctcacctggattgaggattggacaggtgcagcctctgttagtccaggactctgggta 633

                                                                       
Query: 181 tagcgttctcttgcctcgtaagatcttcagtttggtggactttaagactttcttaatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tagcgttctcttgcctcgtaagatcttcagtttggtggactttaagactttcttaatctt 573

                                                                       
Query: 241 cacattgacttcggcatgggagcctttgtcgtgggctgataagatcttgatttttaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cacattgacttcggcatgggagcctttgtcgtgggctgataagatcttgatttttaacac 513

                                                                       
Query: 301 tgtaacgacagaattccaaacttaaaaaaaaaagcatacagatttcatttttctgttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtaacgacagaattccaaacttaaaaaaaaaagcatacagatttcatttttctgttgaa 453

                                                                       
Query: 361 attgtaactatttaaagtcatttccaagtgtgagggaagggcgaattgaggaaaatcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attgtaactatttaaagtcatttccaagtgtgagggaagggcgaattgaggaaaatcagg 393

                                                                       
Query: 421 atacagaaacctgcttttaaggtcatgaggctcattcacccttgcagtgatttaatctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atacagaaacctgcttttaaggtcatgaggctcattcacccttgcagtgatttaatctca 333

                                                                       
Query: 481 tttacattttattttctctttattgggaaatttcaacctttgccccctccagtattatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttacattttattttctctttattgggaaatttcaacctttgccccctccagtattatga 273

                                                                       
Query: 541 cactggaaagacattaaccatcgcctactgcaaatacaattttaagtatattcagctgag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cactggaaagacattaaccatcgcctactgcaaatacaattttaagtatattcagctgag 213

                       
Query: 601 ccaagcatggta 612
           ||||||||||||
Sbjct: 212 ccaagcatggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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