BAC Information

Click to search

BAC

Clone NameMSMg01-108D06
Chromosome10 (Build37)
Map Location 48,101,065 - 48,101,672
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D06.T7 (MSMg01no108_d06.b1)MSMg01-108D06.TJ (MSMg01no108_d06.g1)
ACCAG321714AG321715
length717705
length of high quality
(start - end)
479 (43 - 521)615 (81 - 695)
definitionCHROMAT_FILE: MSMg01no108_d06.b1 PHD_FILE: MSMg01no108_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:58 2005CHROMAT_FILE: MSMg01no108_d06.g1 PHD_FILE: MSMg01no108_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGAGGAGTACCAAATGGCTGAGAAGCAACAGAAAAAAATGTTC
AACACTCTTAATCAGCAGGGAAATGCCAATCAAAACAACGCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTCAGATCAAAAATTAGGGTGACAGCATA
TGCTGGTGAGGATGTGGAGAAAGAGGAACCCTCCTGCATTTCTGGTGGGA
TTGTAAGCTGGTACATCCTCTCTGGAAATCTGTCTTGCGGTTCCTCAGAT
AATTGGGAATAGTACTACAGGAACAACCAGCAGCACCTCCCCCATTATAT
ACCCAAAGATGTTCCAACTTGAAGTAAGGACACATGCTCCACTATGTTCA
TAGAAGCCTTATTTGTGTGGAAAGAACCCAGATGTCTCTCAACAGAGGAA
TGGACACAGAAAATATTGTACATTTACACAATGGTGTACTACTCAGTTGT
TAAAAACAATGAGTTTATGAAATTCTTAAGCAAATGATGGATCTGAAGGA
TATCCTCCTGAGTGAGGTAACCCCAACCCTAATGACCACACAGGATATGC
CCTCTCTGAAAAGTGGATATTACCCCAGAACCTTATAATGCCCAAGAAAC
AGTTTGCCAAATACTTTGAATTCCAGACGAATCATTCTCAAGTGTGGATA
CTTCGTTCCTTCTTAAA
TTTTACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTTAACCTCCCTGGAT
ATATGGATTATAGGATGATCACACATTACAGATAATATCTACTAATAGTT
GAGTACACACACACACAGTACATAGAGATAAATGCAGGGAAAACACCTGT
ATGCATAAATACCCATATGCATAAATAAGAACTTAAAAAGAACCCAATTT
AAACTATTTTTCTAGAACTAGTCACTGTGTGTTAACAGATGAATACATAC
AATTTTTAAAAATATACTCATTTTAGTTTATAAATATATGATACAATAGA
AAATCCTAATTTAGATTCTTATCCGAGTTCCTAGAAAAAAAGATTCTAAA
ATATTTGTGATCTAGGAGCAATTGCAGAGCTAAGAGCATGTTCTTGTTTT
AAACACTTGTTGTAATTCCTGACATTTGCAGGAGCTTCTCTTTATTTAGA
ATTTATTTAGAATTTATTTATTTAGTAGAGTTGCGGACATAATGTAGAAT
AAAGTCTAGTCACTAGAAATGTCAAACTACAGGTAATTAGATATTCTCAA
CGCTCATCCTCATCACCCTCCAGGGAGGAGATAAGTTGTAGAGATATAGT
TAATCTGTCATATTTACATTATGATTCTTTAGAAATGGCTAACAGATGAG
GCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d06.g1 MSMg01no108_d06.g1 CHROMAT_FILE:
MSMg01no108_d06.g1 PHD_FILE: MSMg01no108_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:58 2005
         (615 letters)



>mm_chr10_48100865_48101881
          Length = 1017

 Score = 1029 bits (532), Expect = 0.0
 Identities = 593/618 (95%), Gaps = 16/618 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacttaacctccctggatatatggattataggatgatcacacattacagataatatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacttaacctccctggatatatggattataggatgatcacacattacagataatatct 260

                                                                       
Query: 61  actaatagttgagtacacacacacacagtacatagagataaatgcagggaaaacacctgt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 actaatagttgagtacacacacacacagtacatagaaataaatgcagggaaaacacctgt 320

                                                                       
Query: 121 atgcataaatacccatatgcataaataagaacttaaaaa-gaacccaatttaaactattt 179
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 321 atgcataaatacctatatgcataaataagaacttaaaaaagaacccaatttaagctattt 380

                                                                       
Query: 180 ttctagaactagtcactgtgtgttaacagatgaatacatacaattttt-aaaaatatact 238
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ttctagaactagtcactgtgtgttaacagatgaatacatacaattttttaaaaatatact 440

                                                                       
Query: 239 cattttagtttataaatatatgatacaatagaaaatcctaatttagattcttatccgagt 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 cattttagtttataaatatatgatacaatagaaaatcttaatttagattcttatccgagt 500

                                                                       
Query: 299 tcctagaaaaaaagattctaaaatatttgtgatctaggagcaattgcagagctaagagca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctagaaaaaaagattctaaaatatttgtgatctaggagcaattgcagagctaagagca 560

                                                                       
Query: 359 tgttcttgttttaaacacttgttgtaattcctgacatttgcaggagcttctctttattta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcttgttttaaacacttgttgtaattcctgacatttgcaggagcttctctttattta 620

                                                                       
Query: 419 gaatttat--t-t-agaatttatttatttagtagagttgcggacataatgtagaataaag 474
            ||   ||  | | ||    ||   ||   ||||||||| ||||||||||||||||||||
Sbjct: 621 -aa---atcctgtgag----taaccatg--gtagagttgtggacataatgtagaataaag 670

                                                                       
Query: 475 tctagtcactagaaatgtcaaactacaggtaattagatattctcaacgctcatcctcatc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctagtcactagaaatgtcaaactacaggtaattagatattctcaacgctcatcctcatc 730

                                                                       
Query: 535 accctccagggaggagataagttgtagagatatagttaatctgtcatatttacattatga 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 accctccagggaggagataagttgtagagatatagttaatctgtcatatttacattatga 790

                             
Query: 595 ttctttagaaatggctaa 612
           ||||||||||||||||||
Sbjct: 791 ttctttagaaatggctaa 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1017
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1007
Effective search space:   609235
Effective search space used:   609235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)