BAC Information

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BAC

Clone NameMSMg01-108E01
Chromosome10 (Build37)
Map Location 27,597,697 - 27,598,238
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap18, Lama2, LOC100040385
Downstream geneLOC100040961, LOC100040401, Ptprk, E430004N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108E01.T7 (MSMg01no108_e01.b1)MSMg01-108E01.TJ (MSMg01no108_e01.g1)
ACCAG321749AG321750
length707706
length of high quality
(start - end)
547 (44 - 590)461 (77 - 537)
definitionCHROMAT_FILE: MSMg01no108_e01.b1 PHD_FILE: MSMg01no108_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:03 2005CHROMAT_FILE: MSMg01no108_e01.g1 PHD_FILE: MSMg01no108_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCATTTTCTCTCCCCAGGGTCTAGACCAGTATAGCCCAAACATATTTT
CACCTTTGGTTGCATACAGCCCTTATTTAGTAGGTATTTTTTTTAATTAT
TCATGATATGCCCCAGCAAACAATATTGGAAAGAATGTATGTATACTTTG
TGTGTGTGCCCTCTCTAGAGAAAACATTTCAGATTTATGACATGCAAACC
ATTTAGAGGAGTCCTGTGTTATAATTCTAGATGGCTGTTTAGTTTTATCA
TTAAATTTATTTCAAAAATCTTCAAACATTTACCACAGATAAACTATATT
GGCAAAGATATATGTGATTGATTAAAATTGATGCTTATAGCAGGTGGCCA
AACTACACAAATCTGCTTAGCCATGAAGCTGCATTAAAAACACCACACAT
AAAACTAATGTGCCATTTTAAGAAAGCAGTTGAAGCCAACCCAGTAGCTG
CTGCTTTTTAAAAATTTGACCATTTTGCTGGACATCCCCTACCAATATGC
TAATATCCATCTGGGACAGATGCCATTAAATAATCCTAAAATGCCGAATA
AGATGATCCCCAAATATCTTTATTTGCTTCCTAAAAGCAGTAGGTTAAAA
TCATTTTTTTTGGTCATTGTGCGTGTGTGTGTGCTGTGTGTGTGAGCGAG
TGCGAGC
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTAACCTGAGATAAAGGTTCAG
AACTAGATAGGAAATATTAGTCACTGACTAGAGTAATGATAACTGTCTGC
TATGAACAGGTATTAATTAATAGAAGTCTGTGGCTCCATGTAGAGAACAC
AACAGATAGATGGTATAAATAAATGTCTGTGGCTCCTGGTAGAGAGCACA
ACCGATGGATGGTATAACAGGATGGCTGCTCTAGGCAGAGAGCTTAACAA
TTAAAAACTATCTGCTTTCTATAGATATCAGTGGAAGTTTAAATTAATTG
CTTTAAGGATGGTATAAAGATATATTGCTCTAATAAGTCTTACAGGAGAC
TCATCTTCTGTCTAATGTGGGCTCCACAGGAATTCTGGGTTTAAATCCTG
GTTTGATAAGCTGCCTCTTATAAGTAGGTATAGAAAGAAAAAAAAAGAAA
GAAAAGGAGAAAGGAAAGAAAAGGAGAAAGGAAAGAAAAGGAGAAAGGAT
AGAAAAGGAGAAAGGAAAGGGAAGGGAAGGGAAGGGAAGGTAAGGTTAAG
TGTAGACTGGTACTTTTCTTTTTTTCCCTTCCTATTTGCTCATGATTGTC
TTGCCCATTTTTTCTTTCATCTCCCTGATATTTTTTTAAAATCGATCTTC
TTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_e01.b1 MSMg01no108_e01.b1 CHROMAT_FILE:
MSMg01no108_e01.b1 PHD_FILE: MSMg01no108_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:03 2005
         (547 letters)



>mm_chr10_27597492_27598438
          Length = 947

 Score =  990 bits (512), Expect = 0.0
 Identities = 536/544 (98%), Gaps = 4/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcattttctctc-c-ccagggtctagaccagtatagcccaaacatattttcacctt 63
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattttctc-cacaccagggtctagaccagtatagcccaaacatattttcacctt 264

                                                                       
Query: 64  tggttgcatacagcccttatttagtaggtattttttttaattattcatgatatgccccag 123
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 tggttacatacagcccttatttagtaggtattttttt-aattattcatgatatgccccag 323

                                                                       
Query: 124 caaacaatattggaaagaatgtatgtatactttgtgtgtgtgccctctctagagaaaaca 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 caaacaatattggaaagaatgtatgtatactttgtgtgtgtgtcctctctagagaaaaca 383

                                                                       
Query: 184 tttcagatttatgacatgcaaaccatttagaggagtcctgtgttataattctagatggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcagatttatgacatgcaaaccatttagaggagtcctgtgttataattctagatggct 443

                                                                       
Query: 244 gtttagttttatcattaaatttatttcaaaaatcttcaaacatttaccacagataaacta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttagttttatcattaaatttatttcaaaaatcttcaaacatttaccacagataaacta 503

                                                                       
Query: 304 tattggcaaagatatatgtgattgattaaaattgatgcttatagcaggtggccaaactac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattggcaaagatatatgtgattgattaaaattgatgcttatagcaggtggccaaactac 563

                                                                       
Query: 364 acaaatctgcttagccatgaagctgcattaaaaacaccacacataaaactaatgtgccat 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaaatctgctttgccatgaagctgcattaaaaacaccacacataaaactaatgtgccat 623

                                                                       
Query: 424 tttaagaaagcagttgaagccaacccagtagctgctgctttttaaaaatttgaccatttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaagaaagcagttgaagccaacccagtagctgctgctttttaaaaatttgaccatttt 683

                                                                       
Query: 484 gctggacatcccctaccaatatgctaatatccatctgggacagatgccattaaataatcc 543
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctggacatcccctaccaacatgctaatatccatctgggacagatgccattaaataatcc 743

               
Query: 544 taaa 547
           ||||
Sbjct: 744 taaa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)