Query= MSMg01no108_g10.b1 MSMg01no108_g10.b1 CHROMAT_FILE:
MSMg01no108_g10.b1 PHD_FILE: MSMg01no108_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
(647 letters)
>mm_chr10_49378839_49379885
Length = 1047
Score = 1114 bits (576), Expect = 0.0
Identities = 616/642 (95%), Gaps = 21/642 (3%)
Strand = Plus / Plus
Query: 7 gaattcatctgaacaca-aaaatgaattggggtttctcaatctaggtagttaaataataa 65
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatctgaagagacaaaatgaattggggtttctcaatctaggtagttaaataataa 265
Query: 66 tttaatatttatttcatctagaacttcataatcacattttataaaatcctgttatcaaca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttaatatttatttcatctagaacttcataatcacattttataaaatcctgttatcaaca 325
Query: 126 tagatattaatacctgatggtaaaaggtgtacatagaaaattaagcaaggaacctggtag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagatattaatacctgatggtaaaaggtgtacatagaaaattaagcaaggaacctggtag 385
Query: 186 gtgattccctgcctctagtcatgaggtcatgtctgacatccttaagaatatggaatgggg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgattccctgcctctagtcatgaggtcatgtctgacatccttaagaatatggaatgggg 445
Query: 246 aaaaacatggcacttttctagcttgatacattacacacacatacacacacacacacacac 305
||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 446 aaaaacatggcacttctctagcttgatacataacacacacat------------------ 487
Query: 306 acacacacacacacacacacacacacacacgtgatgtctctcatacagtaaagtaagacc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 --acacacacacacacacacacacacacacgtgatgtctctcatacagtaaagtaagacc 545
Query: 366 agcttatatgttctaagaaccagagagatgtccataagaagcttttcttccatgtgtact 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agcttatatgttctaagaaccagagagatgtccataagaagcttttcttccatgtgtact 605
Query: 426 acctattcagtctttgttgcgtactagaactttcatgctagccagcttgctacaatggtt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acctattcagtctttgttgcgtactagaactttcatgctagccagcttgctacaatggtt 665
Query: 486 ctgttccaattttcagtaacatacttattattgtgtggtagagtcaggttatatatagga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctgttccaattttcagtaacatacttattattgtgtggtagagtcaggttatatatagga 725
Query: 546 acatcagaaatgataaactaattcttctaagaaaagaactgtctcctatgaaccaagaaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acatcagaaatgataaactaattcttctaagaaaagaactgtctcctatgaaccaagaaa 785
Query: 606 aggactaagttttcccaagaacacagactgaaggaattattc 647
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 786 aggactaagttttcccaagaacacagactgaaggaactattc 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_g10.g1 MSMg01no108_g10.g1 CHROMAT_FILE:
MSMg01no108_g10.g1 PHD_FILE: MSMg01no108_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
(615 letters)
>mm_chr10_49434667_49435680
Length = 1014
Score = 1158 bits (599), Expect = 0.0
Identities = 611/615 (99%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 1 tcctagatgattatcttttttaaaaaaaatctgatgtggtttttgtttgtaggcatttga 60
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 814 tcctagatgattatctttttt-aaaaaattctgatgtggtttttgtttgtaggcatttga 756
Query: 61 atttttttccctaagcttctcctttgcaatagctttccattgggaaatttctataccaaa 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 755 atttttttccctaatcttctcctttgcaatagctttccattgggaaacttctataccaaa 696
Query: 121 atatttccttggaaatttcttttgtttataccccagcttttgcttgaattaattttttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atatttccttggaaatttcttttgtttataccccagcttttgcttgaattaattttttcc 636
Query: 181 ttagaaatataataccatttagtaacaatgatattgaagactaacttttgttctggcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttagaaatataataccatttagtaacaatgatattgaagactaacttttgttctggcatt 576
Query: 241 ttgcaaaatacccagggttacttattttgattacagcatttagtggaaaatcctaagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgcaaaatacccagggttacttattttgattacagcatttagtggaaaatcctaagaga 516
Query: 301 cacatcatggattcctgacactgtgtatatgcatttaaaacaaataatctataacatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacatcatggattcctgacactgtgtatatgcatttaaaacaaataatctataacatatt 456
Query: 361 tatagaaacaaaaatgtaccaccgtgttctttgaaacatcagcagtctccatggcttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatagaaacaaaaatgtaccaccgtgttctttgaaacatcagcagtctccatggcttgag 396
Query: 421 agaggtaatagacagcccaaggacgcctcaaaattcatgaagtttgtacaaaccaaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agaggtaatagacagcccaaggacgcctcaaaattcatgaagtttgtacaaaccaaaatt 336
Query: 481 tatttttaagtgttgaataagaaacaatttccatttcaggttctttttgagcctgcacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatttttaagtgttgaataagaaacaatttccatttcaggttctttttgagcctgcacaa 276
Query: 541 tgcataattacaattagctgattggcagcagttccttctagtgatttaagatcattatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgcataattacaattagctgattggcagcagttccttctagtgatttaagatcattatgc 216
Query: 601 agtttgtttcactgt 615
|||||||||||||||
Sbjct: 215 agtttgtttcactgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
