BAC Information

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BAC

Clone NameMSMg01-108N14
Chromosome10 (Build37)
Map Location 24,310,735 - 24,311,365
singlet/doubletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537
Downstream geneCtgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N14.T7 (MSMg01no108_n14.b1)MSMg01-108N14.TJ (MSMg01no108_n14.g1)
ACCAG322190AG322191
length716713
length of high quality
(start - end)
99 (66 - 164)631 (77 - 707)
definitionCHROMAT_FILE: MSMg01no108_n14.b1 PHD_FILE: MSMg01no108_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:50 2005CHROMAT_FILE: MSMg01no108_n14.g1 PHD_FILE: MSMg01no108_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGATTATGACATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATGATAGATAGATAGATGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGACCGATAGATTGGTAGATAGA
TAGAACCCACCTCACTTATTTTAGTCTCCTTAACCTTTTCACACACCAAA
CTCACCCGCCACAACTTTCCTGACCCCTCCCGACACCCCCCCCCCCACCG
ACCATCTCCCCACTTCCTTGTCGTGCCCACCCCTCCTCTCACGAGGTCTA
CGTTACCTAGCCTTCCCCCCACACTAGTCATTCCAGTTATATCCGCCATA
TCGTTCCTCTCCCGCCATAACTTCTACTCCTCGCCCATAGCGCCTGGCCG
CACGCATCCTTCTCAGCCACCTGCCTTCGCTCCCTATACTTCAACTCCCC
CCATGCATGTATCCTCTGCCCCCTCTCCATGACCTATCCTTTTGCCCTTT
AGCCCCCCGTACACGCCTCCCCACCTGTCCACCCGTTTTTCCCCCACGTC
CCAAGCCCCCCCGCTACCTCACCTCTCTCACACCCGTTCCACCATCCCCA
CACCCTCATTTCCCACCCCCTGCCACTCTTTCCCCCACTCGCTCCCCTCC
TCATTGCACCGAAACG
NTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAATTTTCTTAGGATATTTTCA
GACGCAAAGGTATTGGTCAGAAGGCAATTACTCTGTGTGGTTTGTTTAAC
ATTTGCCTGCTCATTTCCTTGCTTGAACCTGTAGTCTGGGGTAGAGGAGG
AGAGGGAGGACACTCTGTCTTAATGAGGTACTCCCTACACATTCTCTCAA
GTTAAACTGGGCTAGTCCTCTCCGCTGACTCTAGGCCTGTGCTAACAGCA
GGTGGCGATAGAGAGCACAAGTGTTGCTAAGGCCCCAGCCTTCTCTTACA
GGTGGCAAGTCAAAAGTATTGCGAATGAGGGAGAATCTGGTCCTGTTTTC
CAATTGAATTAAGTGCAATATGAAATGTGATAGGTTATGTAAATCTAGAA
GAGAGATACTCATTTATTAAAATGTGTACTTTGGAGGGACTAATCAATAG
GTTTAGGAGGAACAAATTGGGATGGAGTGTTTATTCCAAGGAATGGAAGT
AAATGAAAGTAGTGGGAGACAGCTGATAACTATACATGAACACACCCCAG
AATTTTGGTGAGGTGTGGGATAAATTTAGGCAGAGTCCCATCTGTTCACC
CTTGGAAACGTGCCTGTGGTCTGAGCCCTGGACTTGCAATGCTAGGGGTC
TCTGGATTAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n14.g1 MSMg01no108_n14.g1 CHROMAT_FILE:
MSMg01no108_n14.g1 PHD_FILE: MSMg01no108_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:50 2005
         (631 letters)



>mm_chr10_24310535_24311565
          Length = 1031

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/631 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaattttcttaggatattttcagacgcaaaggtattggtcagaaggcaattactctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tctaattttcttaggatattttcagacgcaaaggtattggtcagaaggcaattactctgt 772

                                                                       
Query: 61  gtggtttgtttaacatttgcctgctcatttccttgcttgaacctgtagtctggggtagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gtggtttgtttaacatttgcctgctcatttccttgcttgaacctgtagtctggggtagag 712

                                                                       
Query: 121 gaggagagggaggacactctgtcttaatgaggtactccctacacattctctcaagttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaggagagggaggacactctgtcttaatgaggtactccctacacattctctcaagttaaa 652

                                                                       
Query: 181 ctgggctagtcctctccgctgactctaggcctgtgctaacagcaggtggcgatagagagc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 651 ctgggctagtcctctccgctgactctaggcttgtgctaacagcaggtggcgatagagagc 592

                                                                       
Query: 241 acaagtgttgctaaggccccagccttctcttacaggtggcaagtcaaaagtattgcgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acaagtgttgctaaggccccagccttctcttacaggtggcaagtcaaaagtattgcgaat 532

                                                                       
Query: 301 gagggagaatctggtcctgttttccaattgaattaagtgcaatatgaaatgtgataggtt 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gagggagaatctggccctgttttccaattgaattaagtgcaatatgaaatgtgataggtt 472

                                                                       
Query: 361 atgtaaatctagaagagagatactcatttattaaaatgtgtactttggagggactaatca 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atgtaaatctagaagggagatactcatttattaaaatgtgtactttggagggactaatca 412

                                                                       
Query: 421 ataggtttaggaggaacaaattgggatggagtgtttattccaaggaatggaagtaaatga 480
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 411 acaggtttaggaggaacaaattgggatggagtgtttattccaaggaacggaagtaaatga 352

                                                                       
Query: 481 aagtagtgggagacagctgataactatacatgaacacaccccagaattttggtgaggtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aagtagtgggagacagctgataactatacatgaacacaccccagaattttggtgaggtgt 292

                                                                       
Query: 541 gggataaatttaggcagagtcccatctgttcacccttggaaacgtgcctgtggtctgagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gggataaatttaggcagagtcccatctgttcacccttggaaacgtgcctgtggtctgagc 232

                                          
Query: 601 cctggacttgcaatgctaggggtctctggat 631
           |||||||||||||||||||||||||||||||
Sbjct: 231 cctggacttgcaatgctaggggtctctggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)